Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1486
(800 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456886-1|CAG33167.1| 308|Homo sapiens COPE protein. 57 9e-08
BC017285-1|AAH17285.1| 308|Homo sapiens coatomer protein comple... 57 9e-08
BC007250-1|AAH07250.1| 308|Homo sapiens coatomer protein comple... 57 9e-08
BC003155-1|AAH03155.1| 308|Homo sapiens coatomer protein comple... 57 9e-08
AK222584-1|BAD96304.1| 308|Homo sapiens epsilon subunit of coat... 57 9e-08
AJ249366-1|CAB55628.1| 308|Homo sapiens epsilon-COP protein pro... 57 9e-08
AJ131182-1|CAA10316.1| 308|Homo sapiens Epsilon COP protein. 57 9e-08
AF092438-1|AAP97213.1| 307|Homo sapiens epsilon-COP protein. 57 9e-08
AC005197-2|AAC24612.1| 245|Homo sapiens COPE_HUMAN protein. 57 9e-08
U89336-8|AAB47496.1| 200|Homo sapiens NG5 protein. 30 8.5
BX284686-3|CAM26211.1| 225|Homo sapiens proline-rich transmembr... 30 8.5
BX284686-2|CAM26210.1| 306|Homo sapiens proline-rich transmembr... 30 8.5
BC063046-1|AAH63046.1| 306|Homo sapiens proline-rich transmembr... 30 8.5
BC013201-1|AAH13201.1| 225|Homo sapiens PRRT1 protein protein. 30 8.5
AL845464-2|CAI41796.2| 225|Homo sapiens proline-rich transmembr... 30 8.5
AL845464-1|CAI41794.2| 306|Homo sapiens proline-rich transmembr... 30 8.5
AL662884-8|CAI18341.2| 225|Homo sapiens proline-rich transmembr... 30 8.5
AL662884-7|CAI18339.2| 306|Homo sapiens proline-rich transmembr... 30 8.5
AL662828-8|CAI17421.2| 225|Homo sapiens proline-rich transmembr... 30 8.5
AL662828-7|CAI17422.2| 306|Homo sapiens proline-rich transmembr... 30 8.5
AK054885-1|BAB70821.1| 306|Homo sapiens protein ( Homo sapiens ... 30 8.5
>CR456886-1|CAG33167.1| 308|Homo sapiens COPE protein.
Length = 308
Score = 56.8 bits (131), Expect = 9e-08
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +2
Query: 131 QVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 250
+V+ RYL+QL D+H HPF+KEY+AK ++F RL QY PS
Sbjct: 268 EVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPS 307
>BC017285-1|AAH17285.1| 308|Homo sapiens coatomer protein complex,
subunit epsilon protein.
Length = 308
Score = 56.8 bits (131), Expect = 9e-08
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +2
Query: 131 QVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 250
+V+ RYL+QL D+H HPF+KEY+AK ++F RL QY PS
Sbjct: 268 EVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPS 307
>BC007250-1|AAH07250.1| 308|Homo sapiens coatomer protein complex,
subunit epsilon protein.
Length = 308
Score = 56.8 bits (131), Expect = 9e-08
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +2
Query: 131 QVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 250
+V+ RYL+QL D+H HPF+KEY+AK ++F RL QY PS
Sbjct: 268 EVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPS 307
>BC003155-1|AAH03155.1| 308|Homo sapiens coatomer protein complex,
subunit epsilon protein.
Length = 308
Score = 56.8 bits (131), Expect = 9e-08
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +2
Query: 131 QVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 250
+V+ RYL+QL D+H HPF+KEY+AK ++F RL QY PS
Sbjct: 268 EVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPS 307
>AK222584-1|BAD96304.1| 308|Homo sapiens epsilon subunit of
coatomer protein complex isoform a variant protein.
Length = 308
Score = 56.8 bits (131), Expect = 9e-08
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +2
Query: 131 QVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 250
+V+ RYL+QL D+H HPF+KEY+AK ++F RL QY PS
Sbjct: 268 EVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPS 307
>AJ249366-1|CAB55628.1| 308|Homo sapiens epsilon-COP protein
protein.
Length = 308
Score = 56.8 bits (131), Expect = 9e-08
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +2
Query: 131 QVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 250
+V+ RYL+QL D+H HPF+KEY+AK ++F RL QY PS
Sbjct: 268 EVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPS 307
>AJ131182-1|CAA10316.1| 308|Homo sapiens Epsilon COP protein.
Length = 308
Score = 56.8 bits (131), Expect = 9e-08
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +2
Query: 131 QVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 250
+V+ RYL+QL D+H HPF+KEY+AK ++F RL QY PS
Sbjct: 268 EVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPS 307
>AF092438-1|AAP97213.1| 307|Homo sapiens epsilon-COP protein.
Length = 307
Score = 56.8 bits (131), Expect = 9e-08
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +2
Query: 131 QVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 250
+V+ RYL+QL D+H HPF+KEY+AK ++F RL QY PS
Sbjct: 267 EVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPS 306
>AC005197-2|AAC24612.1| 245|Homo sapiens COPE_HUMAN protein.
Length = 245
Score = 56.8 bits (131), Expect = 9e-08
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +2
Query: 131 QVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 250
+V+ RYL+QL D+H HPF+KEY+AK ++F RL QY PS
Sbjct: 205 EVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPS 244
>U89336-8|AAB47496.1| 200|Homo sapiens NG5 protein.
Length = 200
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 124 RFTGVGPIPGPVARQPPPASLREGIQGQDGRVPTSGRAVPTL 249
RF G P P P A PPP + + Q VPT V TL
Sbjct: 11 RFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTL 52
>BX284686-3|CAM26211.1| 225|Homo sapiens proline-rich transmembrane
protein 1 protein.
Length = 225
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 124 RFTGVGPIPGPVARQPPPASLREGIQGQDGRVPTSGRAVPTL 249
RF G P P P A PPP + + Q VPT V TL
Sbjct: 36 RFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTL 77
>BX284686-2|CAM26210.1| 306|Homo sapiens proline-rich transmembrane
protein 1 protein.
Length = 306
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 124 RFTGVGPIPGPVARQPPPASLREGIQGQDGRVPTSGRAVPTL 249
RF G P P P A PPP + + Q VPT V TL
Sbjct: 117 RFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTL 158
>BC063046-1|AAH63046.1| 306|Homo sapiens proline-rich transmembrane
protein 1 protein.
Length = 306
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 124 RFTGVGPIPGPVARQPPPASLREGIQGQDGRVPTSGRAVPTL 249
RF G P P P A PPP + + Q VPT V TL
Sbjct: 117 RFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTL 158
>BC013201-1|AAH13201.1| 225|Homo sapiens PRRT1 protein protein.
Length = 225
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 124 RFTGVGPIPGPVARQPPPASLREGIQGQDGRVPTSGRAVPTL 249
RF G P P P A PPP + + Q VPT V TL
Sbjct: 36 RFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTL 77
>AL845464-2|CAI41796.2| 225|Homo sapiens proline-rich transmembrane
protein 1 protein.
Length = 225
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 124 RFTGVGPIPGPVARQPPPASLREGIQGQDGRVPTSGRAVPTL 249
RF G P P P A PPP + + Q VPT V TL
Sbjct: 36 RFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTL 77
>AL845464-1|CAI41794.2| 306|Homo sapiens proline-rich transmembrane
protein 1 protein.
Length = 306
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 124 RFTGVGPIPGPVARQPPPASLREGIQGQDGRVPTSGRAVPTL 249
RF G P P P A PPP + + Q VPT V TL
Sbjct: 117 RFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTL 158
>AL662884-8|CAI18341.2| 225|Homo sapiens proline-rich transmembrane
protein 1 protein.
Length = 225
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 124 RFTGVGPIPGPVARQPPPASLREGIQGQDGRVPTSGRAVPTL 249
RF G P P P A PPP + + Q VPT V TL
Sbjct: 36 RFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTL 77
>AL662884-7|CAI18339.2| 306|Homo sapiens proline-rich transmembrane
protein 1 protein.
Length = 306
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 124 RFTGVGPIPGPVARQPPPASLREGIQGQDGRVPTSGRAVPTL 249
RF G P P P A PPP + + Q VPT V TL
Sbjct: 117 RFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTL 158
>AL662828-8|CAI17421.2| 225|Homo sapiens proline-rich transmembrane
protein 1 protein.
Length = 225
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 124 RFTGVGPIPGPVARQPPPASLREGIQGQDGRVPTSGRAVPTL 249
RF G P P P A PPP + + Q VPT V TL
Sbjct: 36 RFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTL 77
>AL662828-7|CAI17422.2| 306|Homo sapiens proline-rich transmembrane
protein 1 protein.
Length = 306
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 124 RFTGVGPIPGPVARQPPPASLREGIQGQDGRVPTSGRAVPTL 249
RF G P P P A PPP + + Q VPT V TL
Sbjct: 117 RFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTL 158
>AK054885-1|BAB70821.1| 306|Homo sapiens protein ( Homo sapiens
cDNA FLJ30323 fis, clone BRACE2007109, highly similar to
Extensin-like protein NG5. ).
Length = 306
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 124 RFTGVGPIPGPVARQPPPASLREGIQGQDGRVPTSGRAVPTL 249
RF G P P P A PPP + + Q VPT V TL
Sbjct: 117 RFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTL 158
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,090,138
Number of Sequences: 237096
Number of extensions: 2166617
Number of successful extensions: 5471
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5447
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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