Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1486
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical pr...    36   0.026
Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical pr...    32   0.55 
Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical pr...    32   0.55 
AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin ...    32   0.55 
Z67737-2|CAA91537.3|  400|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL021175-2|CAA15966.1|  322|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical
           protein F45G2.4 protein.
          Length = 292

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 95  LVPTQYNSLSVSQVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAA 235
           +V  Q N      V  R+++QL   HP HP+V ++  K  EF R+A+
Sbjct: 243 IVSAQLNEKD-DDVVERFISQLKHEHPNHPWVIDFNEKEAEFDRVAS 288


>Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical
           protein F44A6.1b protein.
          Length = 467

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 116 SLSVSQVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPSV 253
           ++    + A  +A  +D  PQ  F K +KAK DE +RL  Q +  +
Sbjct: 94  NMKEEDIKAGNIADHIDDLPQEVFDKLHKAKFDEIERLRKQIEEQI 139


>Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical
           protein F44A6.1a protein.
          Length = 453

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 116 SLSVSQVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPSV 253
           ++    + A  +A  +D  PQ  F K +KAK DE +RL  Q +  +
Sbjct: 94  NMKEEDIKAGNIADHIDDLPQEVFDKLHKAKFDEIERLRKQIEEQI 139


>AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin
           protein.
          Length = 456

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 116 SLSVSQVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPSV 253
           ++    + A  +A  +D  PQ  F K +KAK DE +RL  Q +  +
Sbjct: 97  NMKEEDIKAGNIADHIDDLPQEVFDKLHKAKFDEIERLRKQIEEQI 142


>Z67737-2|CAA91537.3|  400|Caenorhabditis elegans Hypothetical
           protein T01H10.2 protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
 Frame = -3

Query: 249 EGWYCAARRWNSSVL----ALYSFTKGCWG-WLSSNWARYRADTCETERELYCVGTSNAI 85
           E WY     WN+S+       Y+     W   LS+  A    D  + +  + CV ++  I
Sbjct: 101 EYWYDIRLSWNASLYDDIDTFYTRQSNVWSPTLSAFGADELVDLRDPDFRMVCVNSNGYI 160

Query: 84  YRQIAKRISRRSVGSLGMFVFFY 16
           Y  I+ R+S     ++  F F Y
Sbjct: 161 YDYISVRVSSSCPMNVYKFPFDY 183


>AL021175-2|CAA15966.1|  322|Caenorhabditis elegans Hypothetical
           protein Y6E2A.2 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 152 AQLLDSHPQHPFVKEYKAKTDEFQRLAAQY 241
           +QL D H    F+K Y  K D+F   +AQY
Sbjct: 158 SQLKDLHVYPEFLKSYCLKPDDFAYASAQY 187


>Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical
           protein C07A9.8 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 171 WLSSNWARYRADTCETERELYCVGTSNAIYRQIAK 67
           W+S NWA    +  +TE+ +      NAI ++I+K
Sbjct: 225 WVSFNWALELLNVAKTEKSIDGDNARNAIAQEISK 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,862,411
Number of Sequences: 27780
Number of extensions: 347237
Number of successful extensions: 857
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)