Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1484
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0612 + 4902197-4902929,4903443-4904071                           30   1.9  
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243...    29   3.3  

>11_01_0612 + 4902197-4902929,4903443-4904071
          Length = 453

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -1

Query: 677 SAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLAD 555
           +AA  PN V  ID+       AAA P  + PEAA  P L D
Sbjct: 25  AAAAAPNQVA-IDVVVVHHHGAAAAPGQQAPEAAPVPHLLD 64


>08_02_1034 +
           23823194-23823307,23823399-23823620,23823984-23824309,
           23824648-23824777,23825145-23825441,23825550-23825815,
           23827835-23828333,23828902-23828993,23829571-23829735,
           23829817-23830204,23830275-23830393,23830494-23830524,
           23830675-23830880,23830970-23831014,23831120-23831201,
           23832210-23832398,23834499-23834602,23834669-23834759,
           23835097-23835225,23835425-23835556,23835779-23835949,
           23836143-23836171,23836214-23836301,23836313-23836391,
           23836666-23836844
          Length = 1390

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +1

Query: 169 TPLSLTWGSFTHICYS*SLALAAEHELM 252
           TPL L WGSF   CY  SL    EH  M
Sbjct: 236 TPLQLQWGSFQSYCYR-SLIDGMEHIAM 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,433,765
Number of Sequences: 37544
Number of extensions: 234709
Number of successful extensions: 645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)