Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1484
         (800 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY507107-1|AAS87021.1| 1043|Homo sapiens NMDA receptor subunit 3...    35   0.39 
AC004528-2|AAC12680.1|  901|Homo sapiens R32184_2 protein.             32   2.8  

>AY507107-1|AAS87021.1| 1043|Homo sapiens NMDA receptor subunit 3B
           protein.
          Length = 1043

 Score = 34.7 bits (76), Expect = 0.39
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = +3

Query: 156 LGVENATLTHMG*FHTYMLQLISRVGSGARVNVFAASSGRVSKTVNTRPP 305
           LG+ +A L+ +G  H +  Q + R+  G+R+  +  +S ++ + +NT PP
Sbjct: 840 LGLGSALLSSLG-EHAFFRQALPRIRKGSRLQYWLHTSQKIHRALNTEPP 888


>AC004528-2|AAC12680.1|  901|Homo sapiens R32184_2 protein.
          Length = 901

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 156 LGVENATLTHMG*FHTYMLQLISRVGSGARVNVFAASSGRVSKTVNTRPP 305
           LG+ +A L+ +G  H +    + R+  G+R+  +  +S ++ + +NT PP
Sbjct: 840 LGLGSALLSSLG-EHAFFRLALPRIRKGSRLQYWLHTSQKIHRALNTEPP 888


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,443,399
Number of Sequences: 237096
Number of extensions: 1262161
Number of successful extensions: 2487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2486
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)