Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1483
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.6  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    26   6.6  

>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +1

Query: 109 VLFHSKLLPINNFTFVPINLPFNKYVH-----VKNINYINSLIFKTNFPYKLII 255
           + F S +LPI+ F F     P++ YVH     + +I +  SL+F     Y  II
Sbjct: 412 LFFGSIMLPISMFWFAWTCYPYHPYVHWIVPLISSIFFGWSLLFVFFVSYNYII 465


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 176 LNGKFIGTNVKLFIGKS-FE*NKTYKK*AIID 84
           LNGK  GT   +F GK+ F  N+ Y+   I+D
Sbjct: 297 LNGKHKGTKTHVFDGKTLFPTNRVYQVCDIVD 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,268
Number of Sequences: 5004
Number of extensions: 40245
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)