Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1482
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    28   1.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.4  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   7.7  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.7  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.7  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 242 SLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARSEFSCI*IFVVL 99
           S    SD +K +  + +N      P WR+    +A SE SC+ ++ +L
Sbjct: 314 SFCSSSDDAKPITFVTKNLRKFPIPEWRSSLEVQAESEQSCLPLYPLL 361


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = -1

Query: 479 CRTHLNIDISNAHCGPWRHIQDHSCLRAGC---IKNINHIAWLVP 354
           C   +N   S   CG   H+   SC+R  C   I+  N  AW  P
Sbjct: 200 CTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCP 244


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 269 PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEP 168
           PKT +T  +S +  S  S   +L  QNF+N   P
Sbjct: 577 PKTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHP 610


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 199  YFKIFIITSNLSGARVMFSVRVASSRVYEFLSSWFR 92
            + K+   T ++   R+ F   +     YE LSSW+R
Sbjct: 965  FTKVITKTFSIKSIRLQFLSLIIYEITYEQLSSWYR 1000


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 477 QDTFEHRHFERTLRSVETHPGPLLSEG 397
           QD  E + +  +++S  TH  PL++ G
Sbjct: 147 QDELERKEYNESMQSSVTHKRPLVTRG 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,543
Number of Sequences: 5004
Number of extensions: 46677
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)