Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1480
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    28   1.8  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   5.4  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   9.5  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -3

Query: 498 IVY*VTNI-FHXKL-YDISVSQFCVCFAL*XDSQQFVSPLIKIIIFIVFLTCLRNFHYFS 325
           ++Y + N+ F   L YDI V       +       F S L K++IF+VFL+ + +  +  
Sbjct: 570 VIYFIFNVPFPVFLCYDILVETILPAGSQTLTDSVFSSKLYKLVIFVVFLSLVNSGPFIF 629

Query: 324 RFLTR 310
           R L++
Sbjct: 630 RALSK 634


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 387 LIKIIIFIVFLT--CLRNFHYFSRFLTRHHWFYWLIV 283
           L  +++F +  T  CL  +H + +     +WF WL +
Sbjct: 195 LDSMLLFFIISTFFCLSRYHVYHKAPFTFYWFKWLFL 231


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -3

Query: 363 VFLTCLRNFHYFSRFLTR---HHWF 298
           VF TC +NF  + + +T    H WF
Sbjct: 335 VFQTCAQNFEKYGKIITEKQGHDWF 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,268
Number of Sequences: 5004
Number of extensions: 43984
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)