Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1480
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453...    32   0.61 
02_05_0190 - 26592452-26592693,26592911-26593004,26593425-265936...    29   3.3  
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427...    29   5.7  
06_01_0920 + 7098007-7098065,7098538-7099345                           28   7.5  
10_08_0476 + 18186127-18186277,18186380-18186627,18186713-18187108     28   9.9  

>05_04_0438 +
           21244735-21244782,21245089-21245274,21245307-21245384,
           21245385-21245678,21246137-21246262,21246935-21247168,
           21247534-21248061
          Length = 497

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 427 FRFVTRFATICISAY*NNYFYSIFNMFEKF-SLFFSIPHS-TSLVLLVNCSRAFWF 266
           F FV+    +CI  +  +  Y  F M E + +++ ++ HS  SLVL++ C  A WF
Sbjct: 251 FLFVSSSTLLCIYVFAMSALYIKFLMEEGYPTVWKALKHSPASLVLMIYCFIALWF 306


>02_05_0190 -
           26592452-26592693,26592911-26593004,26593425-26593656,
           26594660-26595066
          Length = 324

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 355 NMFEKFSLFFSIPHSTSLVLLVNCSRAFWFEDWNNQTIE 239
           N+ + F L    P+   +V+ ++C RA W    NN+ ++
Sbjct: 198 NVLDAFRLLQKDPNVQKMVMSLSCDRAVWDAVMNNEAVQ 236


>03_06_0609 -
           35042276-35042388,35042476-35042527,35042624-35042725,
           35043546-35043745,35045258-35045336,35045541-35045595,
           35045947-35046122,35046386-35046988,35047077-35047265,
           35048150-35048201,35048289-35048356,35048873-35048911,
           35048912-35048970,35049639-35049782,35050136-35050238,
           35050368-35050467,35050596-35050612
          Length = 716

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 465 KLYDISVSQFCVCFAL*XDSQQFVSPLIKIIIFIVFLTCLRNFHYFSRFLTRHH 304
           K+Y +      V  A      Q++SPL K II +   T     + FSRFL   H
Sbjct: 485 KMYSVDFGPLNVLRAAAFHGAQYISPLKKNIISLQSSTSFARRYSFSRFLRVIH 538


>06_01_0920 + 7098007-7098065,7098538-7099345
          Length = 288

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 602 EAXNNNI-HVTINLLDIFRAMDTCNTKFIYFLLNLQRVIS 718
           E  N+++ H+ ++  +  +   TCN  +IY  LN  RV++
Sbjct: 94  ERRNSSVLHLPLHDSEFLQISQTCNCNYIYMTLNFIRVLA 133


>10_08_0476 + 18186127-18186277,18186380-18186627,18186713-18187108
          Length = 264

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 312 RHHWFYWLIVVVHSGL 265
           RHHW YWL   V +GL
Sbjct: 219 RHHWVYWLGPFVGAGL 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,476,170
Number of Sequences: 37544
Number of extensions: 226476
Number of successful extensions: 407
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)