Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1480
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine rece...    32   0.42 
AL031630-21|CAA20997.2|  736|Caenorhabditis elegans Hypothetical...    30   2.2  
X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase pro...    28   8.9  
U64841-2|AAB04846.2|  337|Caenorhabditis elegans Serpentine rece...    28   8.9  

>U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine
           receptor, class h protein76, isoform b protein.
          Length = 349

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -2

Query: 439 ILCLFRFVTRFATICISAY*NNYFYSIFNMFEKFSLFFSIPHSTSLVLLVNCSRAFW 269
           +L  + F+    + C  +  +NY+  + N F  F L F+   + S + L++C  A+W
Sbjct: 267 VLVPYAFIVPSVSYCCYSVYSNYYNQMLNNF--FVLVFNFYGTVSTIGLISCHTAYW 321


>AL031630-21|CAA20997.2|  736|Caenorhabditis elegans Hypothetical
           protein Y38H6C.20 protein.
          Length = 736

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 420 KRNKHRIVKPKYHIIXYGKC 479
           ++N HR+ K +Y +I YGKC
Sbjct: 218 EKNAHRLRKMRYFVIFYGKC 237


>X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase
           protein.
          Length = 77

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 397 CISAY*NNYFYSIFNMFEKFSLFFSI 320
           C SAY  N+F  IF  F  F LF+ +
Sbjct: 40  CFSAYFLNFFQFIFFFFNIFQLFYVV 65


>U64841-2|AAB04846.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein14 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -2

Query: 475 FPXKII*YFGFTILCLFRFVTRFAT-ICISAY*NNYFYSIFNMFEKFSLFFSIPHSTSLV 299
           F  K+     F +L L  +VT F   +  +A  N++F+   N+ ++ +L+++IP + + +
Sbjct: 127 FHKKVFPLVKFIVLALSIYVTFFTNPVLFTAKYNSWFFDP-NIGKEANLYYNIPQTINNL 185

Query: 298 LLVNCSRAFW 269
           L+   S A +
Sbjct: 186 LVALLSTALY 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,936,218
Number of Sequences: 27780
Number of extensions: 248976
Number of successful extensions: 586
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)