Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1479
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 223 2e-59
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 209 4e-55
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 101 2e-22
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 97 2e-21
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 85 8e-18
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 73 5e-14
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 70 3e-13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 68 1e-12
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 67 2e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 63 5e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 57 3e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 56 8e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 55 1e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 55 1e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 54 2e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 52 1e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 50 4e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 50 5e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 46 8e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 44 2e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 43 4e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 43 4e-05
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 43 4e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 41 2e-04
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 38 0.001
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 38 0.002
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 33 0.062
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 31 0.25
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 30 0.33
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 29 0.77
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 5.4
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 25 9.5
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 223 bits (545), Expect = 2e-59
Identities = 106/172 (61%), Positives = 127/172 (73%)
Frame = -2
Query: 682 LVXKEELTXEGIKQFYIAIELEEWKLETLCDLYDTLXIAQAVIFCNTRRKVDWLXEXMHL 503
LV K+ELT EGIKQFY+A+E EEWKL+TLCDLY+T+ + QAVIFCNTRRKVDWL E +
Sbjct: 221 LVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTE 280
Query: 502 RDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYDXPSNRE 323
RDFTV +MHG MDQ +R+ +M +FRTGS R+LI DLLARGIDVQQVS VINYD P+NRE
Sbjct: 281 RDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRE 340
Query: 322 NYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDXYXTSIVEMPSDVANLI 167
NY INFVT D R +++IE Y T I EMP ++A+LI
Sbjct: 341 NYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392
Score = 56.8 bits (131), Expect = 3e-09
Identities = 25/39 (64%), Positives = 32/39 (82%)
Frame = -1
Query: 800 IHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 684
I+D+F++L QV+LLSATMP DVLEV+ FMRDP+RI
Sbjct: 182 IYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRI 220
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 209 bits (510), Expect = 4e-55
Identities = 100/172 (58%), Positives = 122/172 (70%)
Frame = -2
Query: 682 LVXKEELTXEGIKQFYIAIELEEWKLETLCDLYDTLXIAQAVIFCNTRRKVDWLXEXMHL 503
LV ++ELT EG+KQ++IA+E EEWK +TLCDLYDTL I QAVIFCN+RRKVDWL E M
Sbjct: 223 LVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMRE 282
Query: 502 RDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYDXPSNRE 323
+FTV +MHG M Q+ER+ IM+ FR G+ RVLI D+ ARGIDVQQVS VINYD P+NRE
Sbjct: 283 ANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRE 342
Query: 322 NYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDXYXTSIVEMPSDVANLI 167
NY INFVT D R L+DIE Y T I EMP ++ +++
Sbjct: 343 NYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMPMNIGDMV 394
Score = 44.0 bits (99), Expect = 3e-05
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = -1
Query: 800 IHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 684
I+D+++ L QV+++SAT+P DVLE++ F +PVRI
Sbjct: 184 IYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRI 222
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 101 bits (241), Expect = 2e-22
Identities = 59/175 (33%), Positives = 88/175 (50%)
Frame = -2
Query: 670 EELTXEGIKQFYIAIELEEWKLETLCDLYDTLXIAQAVIFCNTRRKVDWLXEXMHLRDFT 491
+ELT G+ Q+Y ++ E K+ L L+ L I Q++IFCN+ +V+ L + + ++
Sbjct: 249 DELTLRGVTQYYAFVD-ESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYS 307
Query: 490 VXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYDXPSNRENYXX 311
H M Q R + FR G R L+ DLL RGID+Q V+ VIN+D P N E Y
Sbjct: 308 CFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 367
Query: 310 XXXXXXXXXXXXXXINFVTEADRRALKDIEDXYXTSIVEMPSDVANLI*GAYIFP 146
I+F++ ADR L IE+ T I +P + + Y+FP
Sbjct: 368 RIGRSGRFGHRGLAISFISWADRFNLYRIENELGTEIQPIPPSIDPSL---YVFP 419
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 97.5 bits (232), Expect = 2e-21
Identities = 46/112 (41%), Positives = 68/112 (60%)
Frame = -2
Query: 670 EELTXEGIKQFYIAIELEEWKLETLCDLYDTLXIAQAVIFCNTRRKVDWLXEXMHLRDFT 491
EEL+ EGIKQ Y+ + EE K L +LY L I Q++IFC + + + M T
Sbjct: 319 EELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHT 378
Query: 490 VXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYDXP 335
V + G ++ +R+ IM FR G+ +VL+ +++ARGIDV QV+ V+NYD P
Sbjct: 379 VACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 430
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 85.4 bits (202), Expect = 8e-18
Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 1/173 (0%)
Frame = -2
Query: 694 LYAYLVXKEELTXEGIKQFYIAIELEEWKLETLCDLYDTLXIAQAVIFCNTRRKVDWLXE 515
L Y+ + +LT G++Q Y+ +E E+ K + DL D+L Q VIF + + + L
Sbjct: 255 LEIYVDDETKLTLHGLQQHYVKLE-EKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDR 313
Query: 514 XMHLRDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYDXP 335
+ +F +HG + Q ER + F+ R+ + D+ RGID+++V+ VINYD P
Sbjct: 314 LLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMP 373
Query: 334 SNRENYXXXXXXXXXXXXXXXXINF-VTEADRRALKDIEDXYXTSIVEMPSDV 179
+ ++Y I F +E D + L I++ + +I E+P ++
Sbjct: 374 DSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITELPDEI 426
Score = 31.1 bits (67), Expect = 0.19
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -1
Query: 800 IHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 684
I +VF+ QV++ SAT+ +++ + + FM++P+ I
Sbjct: 219 IQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEI 257
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 72.9 bits (171), Expect = 5e-14
Identities = 38/146 (26%), Positives = 69/146 (47%)
Frame = -2
Query: 607 LETLCDLYDTLXIAQAVIFCNTRRKVDWLXEXMHLRDFTVXAMHGXMDQREREVIMRQFR 428
LE L +LY+ + ++F + + D L + R +T ++HG DQ +R+ + ++
Sbjct: 656 LELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYK 715
Query: 427 TGSXRVLIXXDLLARGIDVQQVSCVINYDXPSNRENYXXXXXXXXXXXXXXXXINFVTEA 248
G VLI ++ARG+DV+ + V+NYD P++ E+Y + F+T
Sbjct: 716 AGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPE 775
Query: 247 DRRALKDIEDXYXTSIVEMPSDVANL 170
+ DI S +P ++ L
Sbjct: 776 QEKYAVDIAKALKMSKQPVPKELQTL 801
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 70.1 bits (164), Expect = 3e-13
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Frame = -2
Query: 691 YAYL-VXKEELTXEGIKQFYIAIELEEWKLETLCDLYDTLXI-AQAVIFCNTRRKVDWLX 518
Y +L V + T E I Q + +E E K L D+ TL +IF T+R D L
Sbjct: 389 YVFLSVGRVGSTSENITQKVVHVEDSE-KRSYLLDILHTLPPEGLTLIFVETKRMADTLT 447
Query: 517 EXMHLRDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYDX 338
+ + +F ++HG QRERE + FR+G +++ + +RG+D+ V+ VINYD
Sbjct: 448 DYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDL 507
Query: 337 PSNRENY 317
P++ ++Y
Sbjct: 508 PTDIDDY 514
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 68.1 bits (159), Expect = 1e-12
Identities = 37/123 (30%), Positives = 60/123 (48%)
Frame = -2
Query: 562 AVIFCNTRRKVDWLXEXMHLRDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLAR 383
A+IF N R + + + L + V +H M QRER + +FR + ++L+ D+ +R
Sbjct: 261 AIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASR 320
Query: 382 GIDVQQVSCVINYDXPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDXYXTS 203
G+D+ V VIN+D P + ++Y I+ VTE D + IED T
Sbjct: 321 GLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGTK 380
Query: 202 IVE 194
+ E
Sbjct: 381 LSE 383
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 67.3 bits (157), Expect = 2e-12
Identities = 29/83 (34%), Positives = 49/83 (59%)
Frame = -2
Query: 565 QAVIFCNTRRKVDWLXEXMHLRDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLA 386
+ +IF T+R D + + + A+HG Q ER+ ++ +FRTG +++ D+ +
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430
Query: 385 RGIDVQQVSCVINYDXPSNRENY 317
RGIDV+ ++ V NYD P N E+Y
Sbjct: 431 RGIDVKGITHVFNYDFPGNTEDY 453
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 62.9 bits (146), Expect = 5e-11
Identities = 41/132 (31%), Positives = 59/132 (44%)
Frame = -2
Query: 565 QAVIFCNTRRKVDWLXEXMHLRDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLA 386
+ VIF + L + + V +HG + Q +RE + +FR G VLI DLLA
Sbjct: 290 RVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLA 349
Query: 385 RGIDVQQVSCVINYDXPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDXYXT 206
RGID V VIN+D P + +Y + F T+ D +K I +
Sbjct: 350 RGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRS 409
Query: 205 SIVEMPSDVANL 170
S E+P+ V L
Sbjct: 410 SGCEVPNWVMAL 421
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 797 HDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 684
H + S+++ L SAT+P V E+++ DP+RI
Sbjct: 212 HILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRI 249
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/81 (29%), Positives = 45/81 (55%)
Frame = -2
Query: 559 VIFCNTRRKVDWLXEXMHLRDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARG 380
+IF N +R ++ + + ++ + +HG Q +RE + Q R + +L+ D+ RG
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRG 579
Query: 379 IDVQQVSCVINYDXPSNRENY 317
ID+ VS V+NY+ + E+Y
Sbjct: 580 IDIPNVSLVLNYNMAKSIEDY 600
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 55.6 bits (128), Expect = 8e-09
Identities = 29/119 (24%), Positives = 58/119 (48%)
Frame = -2
Query: 673 KEELTXEGIKQFYIAIELEEWKLETLCDLYDTLXIAQAVIFCNTRRKVDWLXEXMHLRDF 494
K T EG++Q Y+ ++ ++ L L L + ++F ++ V ++ E ++ D
Sbjct: 303 KPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLK-KKVIVFMSSCASVKYMAELLNYIDL 361
Query: 493 TVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYDXPSNRENY 317
V +HG Q+ R +F +L+ ++ ARG+D+ V ++ YD P + +Y
Sbjct: 362 PVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDY 420
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 54.8 bits (126), Expect = 1e-08
Identities = 29/114 (25%), Positives = 48/114 (42%)
Frame = -2
Query: 565 QAVIFCNTRRKVDWLXEXMHLRDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLA 386
+ +IF ++ + L +HG + Q +R + FR G L+ D+ +
Sbjct: 506 RTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVAS 565
Query: 385 RGIDVQQVSCVINYDXPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDI 224
RGID++ + VINY+ P+ E Y I E DR+ LK +
Sbjct: 566 RGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGV 619
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 800 IHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 684
++++ + Q +L SATM D V ++ R + PVR+
Sbjct: 426 LNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRV 464
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/81 (30%), Positives = 42/81 (51%)
Frame = -2
Query: 559 VIFCNTRRKVDWLXEXMHLRDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARG 380
+IF T L + F+ +HG + Q R + +F++G+ L+ D+ ARG
Sbjct: 289 IIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARG 348
Query: 379 IDVQQVSCVINYDXPSNRENY 317
+D+ V VINYD P++ + Y
Sbjct: 349 LDIPLVDVVINYDIPTDSKAY 369
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 800 IHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 684
I + K++ + + +L SATM V ++ R + PVR+
Sbjct: 210 IDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRV 248
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 54.0 bits (124), Expect = 2e-08
Identities = 24/75 (32%), Positives = 44/75 (58%)
Frame = -2
Query: 559 VIFCNTRRKVDWLXEXMHLRDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARG 380
++F T+ V+++ E + ++V ++G +DQ R + FR G +L+ D+ +RG
Sbjct: 350 LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRG 409
Query: 379 IDVQQVSCVINYDXP 335
ID+ ++ VINYD P
Sbjct: 410 IDIPLLANVINYDFP 424
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 794 DVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 684
++ L Q +L SAT+P +++ ++ ++DPV +
Sbjct: 236 EILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLV 272
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 51.6 bits (118), Expect = 1e-07
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Frame = -2
Query: 661 TXEGIKQFYIAIELEEWKLETLCDLYDTLXIAQAVIFCNTRRKVDWLXEXMH-LRD-FTV 488
T + QFY+ + L E KL+ L T + ++F ++ ++V ++ E +R ++
Sbjct: 254 TPSNLNQFYLTVPLTE-KLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISL 312
Query: 487 XAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYDXPSNRENY 317
+HG Q R + +F + VL D++ARG+D V VI D P + + Y
Sbjct: 313 LHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTY 369
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 50.0 bits (114), Expect = 4e-07
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = -2
Query: 502 RDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYDXPSNRE 323
R + V +HG M Q R + F++G VL+ D+ ARG+D+ +V VIN P E
Sbjct: 439 RKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIE 498
Query: 322 NY 317
+Y
Sbjct: 499 DY 500
Score = 29.5 bits (63), Expect = 0.58
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 764 QVILLSATMPDDVLEVSRCFMRDPVRI 684
Q + SAT P+ V ++ F++DPV+I
Sbjct: 347 QTVFFSATWPESVRALAATFLKDPVKI 373
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 49.6 bits (113), Expect = 5e-07
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = -2
Query: 538 RKVDWLXEXMHLRDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVS 359
R ++ + E ++ + F+ + + ER+ I+ +F TG +L+ DL+ARGIDV
Sbjct: 449 RLLELIHESLN-QSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQ 507
Query: 358 CVINYDXPSNRENY 317
VINYD P + +Y
Sbjct: 508 NVINYDPPLSVRSY 521
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 45.6 bits (103), Expect = 8e-06
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Frame = -2
Query: 670 EELTXEGIKQFYIAIELEEW---KLETLCDLYDTLXIAQAVIFCNTRRKVDWLXEXM--H 506
E T E + QF I +L++ L L L + ++ ++F T VD++ + H
Sbjct: 256 EPPTHERVPQFVIETKLDKVFSSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENH 315
Query: 505 LRDFTVXAMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYDXPSNR 326
L+ +H + +R I FR +L D++ARG+D ++ V+ PSN
Sbjct: 316 LK-IPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNT 374
Query: 325 ENY 317
++Y
Sbjct: 375 DDY 377
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = -2
Query: 481 MHGXMDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYDXPSNRENY 317
+H +DQ++R + +F+ VL+ D+ ARGID+ V+ VI+Y P + Y
Sbjct: 419 LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMY 473
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/102 (22%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Frame = -2
Query: 613 WKLETLCDLYDTLXIAQAVIFCNTRRKVDWLXEXM--HLRDFTVXAMHGXMDQREREVIM 440
+K++ + L T+ +A++F ++ V++ + F + A+HG Q R
Sbjct: 242 YKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNF 301
Query: 439 RQFRTGSXR-VLIXXDLLARGIDVQQVSCVINYDXPSNRENY 317
+F+ + + VL D+ +RG+D+ V V+ D P + +++
Sbjct: 302 EKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSF 343
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 43.2 bits (97), Expect = 4e-05
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = -2
Query: 565 QAVIFCNTRRKVDWLXEXMHLRDF----TVXAMHGXMDQREREVIMRQFR--TGSXRVLI 404
+A+IFC T++ V+++ +H D V G + ER++ FR G R++I
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMI 1476
Query: 403 XXDLLARGIDVQQVSCVINYDXPSNRENY 317
GI+ V V++Y P++ +Y
Sbjct: 1477 ATKAFGLGINYMGVRLVVHYGLPASSMDY 1505
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 43.2 bits (97), Expect = 4e-05
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = -2
Query: 565 QAVIFCNTRRKVDWLXEXMHLRDF----TVXAMHGXMDQREREVIMRQFR--TGSXRVLI 404
+A+IFC T++ V+++ +H D V G + ER++ FR G R++I
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMI 1476
Query: 403 XXDLLARGIDVQQVSCVINYDXPSNRENY 317
GI+ V V++Y P++ +Y
Sbjct: 1477 ATKAFGLGINYMGVRLVVHYGLPASSMDY 1505
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Frame = -2
Query: 490 VXAMHGXMDQREREVIMRQFRTGSX---RVLIXXDLLARGIDVQQVSCVINYDXPSNREN 320
V +HG + Q+ R + F + +L+ D+ ARG+D+ V V+ YD P + ++
Sbjct: 470 VYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDD 529
Query: 319 YXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDXYXTSIVEMPSDVANLI 167
Y I F+ + + ++ +I+E P+ + L+
Sbjct: 530 YLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANILEQPNGPSGLL 580
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = -2
Query: 559 VIFCNTRRKVDWLXEXMHLRDFTVXAMH--GXMDQREREVIMRQFRTGSXRVLIXXDLLA 386
+I+C +R + + + D+ + A H +++ ER+ I ++++GS ++++
Sbjct: 746 IIYCLSRTSCEQVAAKLR-NDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFG 804
Query: 385 RGIDVQQVSCVINYDXPSNRENY 317
G+D V VI++ P + E Y
Sbjct: 805 MGVDKGDVRFVIHHSFPKSLEGY 827
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 37.9 bits (84), Expect = 0.002
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = -2
Query: 391 LARGIDVQQVSCVINYDXPSNRENY 317
+ARG+D + V+CV+N+D PSN ++Y
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSY 410
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 32.7 bits (71), Expect = 0.062
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 484 AMHGXMDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVI 350
A+ G + ERE +++ FR VL+ +L G D+ + C++
Sbjct: 294 ALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLM 338
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 30.7 bits (66), Expect = 0.25
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 469 MDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYD 341
M Q+ + ++QF+ G LI + G+D+ +V +I YD
Sbjct: 476 MSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYD 518
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -2
Query: 469 MDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYDXPSN 329
M+Q +++ + QFR G L+ + G+D+ +I YD S+
Sbjct: 515 MNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSS 561
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 29.1 bits (62), Expect = 0.77
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 469 MDQREREVIMRQFRTGSXRVLIXXDLLARGIDVQQVSCVINYD 341
M R ++ + +F+TG VLI + GIDV + VI ++
Sbjct: 407 MTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFN 449
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 647 NTFXGKLFLXYKVCVQDLS*SIEILPIHHQAW 742
N G+++L + +++ ++ ILPI QAW
Sbjct: 1063 NLHHGEIYLRNHILSDEMANNLSILPIRIQAW 1094
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 619 EEWKLETLCDLYD-TLXIAQAVIFCNTRRKVDW 524
+EWKL+ + D YD TL A R + DW
Sbjct: 143 DEWKLDPVYDYYDYTLVQAVYSSLVKHREQKDW 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,217
Number of Sequences: 5004
Number of extensions: 47229
Number of successful extensions: 133
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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