Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1477
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   5.4  
SPBC146.08c |||translation initiation factor eIF1A-like|Schizosa...    26   5.4  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    26   7.2  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.5  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 371 EIVFRYKFIFNGDNCGCSLGMXLVLVNSVAVRMN 270
           ++V++YK  F   NCG  LG  + ++ S  +  N
Sbjct: 665 QVVYQYKADFLWRNCGIILGFAIFILASSLILAN 698


>SPBC146.08c |||translation initiation factor
           eIF1A-like|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 297 QNKXHSERASTIVAVKNKFIPKDNFSGH*IXYIVSEDLK 413
           +NK    R   ++  K++F+ KDN     I Y+V   LK
Sbjct: 54  RNKIWVRRNGFVIVDKSEFLEKDNKIDGTILYVVQSPLK 92


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -3

Query: 126 YLSYI*HVYEYLLS 85
           Y++YI H+YEYL+S
Sbjct: 179 YINYITHLYEYLVS 192


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +3

Query: 54  HKLQRHVYSHLIINIRRRAKYNLNKQ 131
           HKL+ HVY H++ ++ + ++ + N +
Sbjct: 129 HKLEIHVYKHILPDLPQSSEVDRNSE 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,183
Number of Sequences: 5004
Number of extensions: 46534
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)