Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1476
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682...    28   7.5  

>04_04_0927 +
           29467121-29467168,29467518-29467604,29468180-29468269,
           29468547-29468741,29469056-29471080,29471208-29471354,
           29471520-29471923,29472015-29472144
          Length = 1041

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 304 YSNLAIPTYLPTLQ*KYVKHIACNFIFQTNKCITK---IKLTSLCFHKTINHLFALKVYN 474
           YSN + PT +  L+ + V+ + C F F    C+ K   +K  S+C    +   F  K +N
Sbjct: 572 YSNRSSPTLVEALEGRDVESVVCGFNFTAAICLHKTMSMKDQSVCSSCQMVFGFTRKEHN 631


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,216,850
Number of Sequences: 37544
Number of extensions: 228471
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)