Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1473
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   5.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   5.4  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   5.4  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 182 PISNLQGGGNNVQPMQL---VQTPDGQTFLYQPTAQAQPSIDQHQIIHQP 42
           P +N Q   N   P+Q+   +QTP GQ +  QP     P++ Q+  I QP
Sbjct: 368 PRNNPQNVNNGSTPIQIPVSLQTPYGQVY-GQPQYIVDPNMVQYGPILQP 416


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -1

Query: 185 LPISNLQGGGNNVQPMQLVQ----TPDGQTFLYQPTAQAQPSIDQHQIIHQP 42
           +P++ L G   N QP  L Q    +  GQ+ + Q   Q QPS+  + +  QP
Sbjct: 733 VPVAQLSG---NWQPPHLPQAQLPSATGQSGVVQQPYQTQPSVTNNNVATQP 781


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 240 YKFTGSSSEWTADPTTSSLTDFKFARWREQCTANAVSSDT*RPDISVPTDCTGSTIH*PT 61
           Y FTGS+   T  P+ + + D+      +    N  SS+T  P  S   D +    H P 
Sbjct: 160 YSFTGSNILPTQSPSLNQMQDY------QNLQQNG-SSNTTIPSFSSQHDLSQGLTHQPV 212

Query: 60  PNN 52
           PN+
Sbjct: 213 PNH 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,296
Number of Sequences: 5004
Number of extensions: 44830
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)