Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1473
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0263 - 8400488-8400913,8401011-8401481,8401581-8401843,840...    31   1.1  
06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399,437...    30   1.9  
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590...    30   2.5  
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594           29   4.3  

>02_02_0263 -
           8400488-8400913,8401011-8401481,8401581-8401843,
           8401964-8402225
          Length = 473

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -1

Query: 113 QTFLYQPTAQAQPSIDQHQIIHQ 45
           Q FL+Q  +Q+Q  ID+HQ IHQ
Sbjct: 108 QQFLFQGESQSQKFIDEHQKIHQ 130


>06_01_0605 +
           4373697-4373872,4374840-4374876,4375296-4375399,
           4375942-4376137,4376385-4376451,4376895-4376998,
           4377090-4377174,4377309-4377369,4377694-4377825,
           4377924-4377993,4379261-4379413,4379583-4379694,
           4379779-4379920,4380023-4380140,4380862-4380957,
           4381061-4381189
          Length = 593

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 15  FSIIRSLTSRLMNYLVLVNGWLSLCSRLVQKCLAVR 122
           +S++R + S L +YL  VN  L  C+ L+Q    VR
Sbjct: 374 YSLLRVIESELQSYLSAVNTRLGHCTSLIQAATEVR 409


>04_04_1385 -
           33157557-33157655,33157752-33158201,33158864-33159004,
           33159058-33159329,33160371-33160821
          Length = 470

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 166 CKFEIGKT*SCWICCPFGAATC 231
           C +E GK    W CCP   ATC
Sbjct: 393 CIYEYGKYCYAWGCCPLEGATC 414


>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
          Length = 622

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 182 PISNLQGGGNNVQPMQLVQTPDGQTFLYQPTAQAQPS 72
           P S  +GGGN V+ +Q    P+   FL QP    QPS
Sbjct: 129 PASQAKGGGNGVRFVQ----PERMMFLSQPIPGGQPS 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,616,101
Number of Sequences: 37544
Number of extensions: 260239
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)