Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1473
         (800 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59711-1|CAA42231.1|  347|Homo sapiens CAAT-box DNA binding prot...    31   3.7  
AL031778-6|CAB44743.1|  347|Homo sapiens nuclear transcription f...    31   3.7  

>X59711-1|CAA42231.1|  347|Homo sapiens CAAT-box DNA binding protein
           subunit A protein.
          Length = 347

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
 Frame = -1

Query: 233 SQVAAPNGQQIQQLQVL---PISNLQGGGNNV----QPMQLVQTP--DGQTFLYQPTAQA 81
           +QVA+ +GQQ+Q LQV+   P+     GG  +    QP+ +   P   GQT +  P +  
Sbjct: 39  AQVASASGQQVQTLQVVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGT 98

Query: 80  QPSIDQHQIIHQPAGE 33
           Q  + Q Q++  P G+
Sbjct: 99  Q-GLQQIQLV--PPGQ 111


>AL031778-6|CAB44743.1|  347|Homo sapiens nuclear transcription
           factor Y, alpha protein.
          Length = 347

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
 Frame = -1

Query: 233 SQVAAPNGQQIQQLQVL---PISNLQGGGNNV----QPMQLVQTP--DGQTFLYQPTAQA 81
           +QVA+ +GQQ+Q LQV+   P+     GG  +    QP+ +   P   GQT +  P +  
Sbjct: 39  AQVASASGQQVQTLQVVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGT 98

Query: 80  QPSIDQHQIIHQPAGE 33
           Q  + Q Q++  P G+
Sbjct: 99  Q-GLQQIQLV--PPGQ 111


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,187,914
Number of Sequences: 237096
Number of extensions: 1597296
Number of successful extensions: 2788
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2787
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)