Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1472
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470...    28   8.2  
06_01_0004 - 59511-59576,59749-59806,60101-60144,60455-60512,608...    28   8.2  

>09_02_0133 +
           4707944-4708308,4708320-4708534,4708626-4708672,
           4708997-4709393,4710042-4710608,4710708-4710838,
           4711274-4711747
          Length = 731

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 548 YKIELNANVSPSTGRHTVARSNM 616
           YKIELN NV+P   R+ V  +++
Sbjct: 79  YKIELNTNVTPDQRRYNVPTTSL 101


>06_01_0004 -
           59511-59576,59749-59806,60101-60144,60455-60512,
           60810-60867,61165-61222,61871-61928,62225-62282,
           62579-62636,62933-62990,63285-63328,63639-63696,
           64699-64742,65053-65110,65407-65464,66114-66171,
           66468-66818,68051-68108,68405-68462,68759-68816,
           69113-69170,69466-69509,69820-70170,71048-71091,
           71755-71812,72109-72291,72463-72520,72815-72858,
           73877-73920,74584-74641,74938-74995,75292-75349,
           75643-75700,75997-76179,76351-76408,76702-76745,
           77056-77238,77410-77467,77766-77823,78120-78177,
           78473-78530,78826-78869,79180-79362,79534-79591,
           79885-79942,80239-80296,80592-80649,80946-81003,
           81652-81709,82361-82440,83067-83124,83421-83603,
           84127-84184,84480-84537,85188-85245,85541-85598,
           85895-85950
          Length = 1472

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 171 LLTIKCCSIGGTSQSRDPRRTQSSVQPLCRARGLQLTRSVI 293
           LL   CC   G S  R    T +++ P+CRAR L LT  ++
Sbjct: 730 LLPGLCC---GPSDIRRFAETTAALWPMCRARQLNLTARLV 767


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,018,941
Number of Sequences: 37544
Number of extensions: 299129
Number of successful extensions: 764
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)