Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1472
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122259-1|AAM52771.1| 2176|Drosophila melanogaster SD09011p pro...    30   2.6  
AL009192-2|CAA15686.1| 2342|Drosophila melanogaster EG:133E12.4 ...    30   2.6  
AF242291-1|AAF63753.1| 2362|Drosophila melanogaster nuclear prot...    30   2.6  
AE014298-308|AAF45704.2| 2301|Drosophila melanogaster CG4399-PB ...    30   2.6  
BT025087-1|ABE73258.1|  463|Drosophila melanogaster IP13921p pro...    29   6.1  
X68816-1|CAA48713.1|  476|Drosophila melanogaster T-element prot...    29   8.0  
U06920-1|AAC17188.3|  921|Drosophila melanogaster probable gag p...    29   8.0  
S56442-1|AAA14197.1|  476|Drosophila melanogaster Orf1 protein.        29   8.0  

>AY122259-1|AAM52771.1| 2176|Drosophila melanogaster SD09011p protein.
          Length = 2176

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 266  TGATQRLHTTLSASRITTLARPADRATLNC*EG 168
            T +  +L   LS++ +T +ARP D++ L+C  G
Sbjct: 1643 TASVDKLTKQLSSNAVTIIARPKDKSQLSCNSG 1675


>AL009192-2|CAA15686.1| 2342|Drosophila melanogaster EG:133E12.4
            protein.
          Length = 2342

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 266  TGATQRLHTTLSASRITTLARPADRATLNC*EG 168
            T +  +L   LS++ +T +ARP D++ L+C  G
Sbjct: 1808 TASVDKLTKQLSSNAVTIIARPKDKSQLSCNSG 1840


>AF242291-1|AAF63753.1| 2362|Drosophila melanogaster nuclear protein
            EAST protein.
          Length = 2362

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 266  TGATQRLHTTLSASRITTLARPADRATLNC*EG 168
            T +  +L   LS++ +T +ARP D++ L+C  G
Sbjct: 1819 TASVDKLTKQLSSNAVTIIARPKDKSQLSCNSG 1851


>AE014298-308|AAF45704.2| 2301|Drosophila melanogaster CG4399-PB
            protein.
          Length = 2301

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 266  TGATQRLHTTLSASRITTLARPADRATLNC*EG 168
            T +  +L   LS++ +T +ARP D++ L+C  G
Sbjct: 1767 TASVDKLTKQLSSNAVTIIARPKDKSQLSCNSG 1799


>BT025087-1|ABE73258.1|  463|Drosophila melanogaster IP13921p
           protein.
          Length = 463

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +1

Query: 433 VVFEKNCVRDLTST---TSVNQQSAVGSSLQSYYFK-QIKMSL*NRIECKRQSVD 585
           VVF +    D T T   ++ N+ S + + L+  + + +IKM L  +I CK + +D
Sbjct: 10  VVFNERAYNDSTKTKLKSAENKSSTLENGLKKIHIQIEIKMKLYEKINCKIEEMD 64


>X68816-1|CAA48713.1|  476|Drosophila melanogaster T-element
           protein.
          Length = 476

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 494 PQLAHPYNHTISNRSK*VYKIELNANVSPSTGR-HTVARSNMRFDTLRRTHPAVALQRPR 670
           P L+H  N    N S    KI  NA+  PS    HT   +++  ++ R  HPA+A    R
Sbjct: 153 PSLSHSDNSIEKNLSSST-KIGPNASSPPSHAHTHTSKSTDISLES-RSKHPALANTDAR 210

Query: 671 TFSRHPSDTG 700
           +   + +D G
Sbjct: 211 SIKANANDNG 220


>U06920-1|AAC17188.3|  921|Drosophila melanogaster probable gag
           protein protein.
          Length = 921

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 494 PQLAHPYNHTISNRSK*VYKIELNANVSPSTGR-HTVARSNMRFDTLRRTHPAVALQRPR 670
           P L+H  N    N S    KI  NA+  PS    HT   +++  ++ R  HPA+A    R
Sbjct: 153 PSLSHSDNSIEKNLSSST-KIGPNASSPPSHAHTHTSKSTDISLES-RSKHPALANTDAR 210

Query: 671 TFSRHPSDTG 700
           +   + +D G
Sbjct: 211 SIKANANDNG 220


>S56442-1|AAA14197.1|  476|Drosophila melanogaster Orf1 protein.
          Length = 476

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 494 PQLAHPYNHTISNRSK*VYKIELNANVSPSTGR-HTVARSNMRFDTLRRTHPAVALQRPR 670
           P L+H  N    N S    KI  NA+  PS    HT   +++  ++ R  HPA+A    R
Sbjct: 153 PSLSHSDNSIEKNLSSST-KIGPNASSPPSHAHTHTSKSTDISLES-RSKHPALANTDAR 210

Query: 671 TFSRHPSDTG 700
           +   + +D G
Sbjct: 211 SIKANANDNG 220


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,248,848
Number of Sequences: 53049
Number of extensions: 534491
Number of successful extensions: 1172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)