Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1472
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-26|CAB60561.1|  874|Caenorhabditis elegans Hypothetical...    28   5.6  
AC006761-4|AAL32243.1|  498|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AL132862-26|CAB60561.1|  874|Caenorhabditis elegans Hypothetical
           protein Y73F8A.33 protein.
          Length = 874

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 564 MQTSVRRQGGTLWPAATCGLIL 629
           +  SV R GG  W   TCGL L
Sbjct: 44  LSRSVDRNGGVAWECTTCGLTL 65


>AC006761-4|AAL32243.1|  498|Caenorhabditis elegans Hypothetical
           protein Y41G9A.4a protein.
          Length = 498

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 581 STGRHTVARSNM-RFDTLRRTHPAVALQRP 667
           S G  + A SN  RF TL RTHP+  +Q P
Sbjct: 92  SYGGSSPALSNRNRFPTLFRTHPSANMQNP 121


>AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical
           protein Y41G9A.4b protein.
          Length = 860

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 581 STGRHTVARSNM-RFDTLRRTHPAVALQRP 667
           S G  + A SN  RF TL RTHP+  +Q P
Sbjct: 92  SYGGSSPALSNRNRFPTLFRTHPSANMQNP 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,030,903
Number of Sequences: 27780
Number of extensions: 274596
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)