Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1472
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.5  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 521 YDCRDEPTADCWFTEVVEVKSRTQFF 444
           Y C  EP  D  FT  ++++ RT ++
Sbjct: 174 YQCCPEPYVDVTFT--IQIRRRTLYY 197


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 521 YDCRDEPTADCWFTEVVEVKSRTQFF 444
           Y C  EP  D  FT  ++++ RT ++
Sbjct: 174 YQCCPEPYVDVTFT--IQIRRRTLYY 197


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 521 YDCRDEPTADCWFTEVVEVKSRTQFF 444
           Y C  EP  D  FT  ++++ RT ++
Sbjct: 174 YQCCPEPYVDVTFT--IQIRRRTLYY 197


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 521 YDCRDEPTADCWFTEVVEVKSRTQFF 444
           Y C  EP  D  FT  ++++ RT ++
Sbjct: 174 YQCCPEPYVDVTFT--IQIRRRTLYY 197


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 521 YDCRDEPTADCWFTEVVEVKSRTQFF 444
           Y C  EP  D  FT  ++++ RT ++
Sbjct: 174 YQCCPEPYVDVTFT--IQIRRRTLYY 197


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 521 YDCRDEPTADCWFTEVVEVKSRTQFF 444
           Y C  EP  D  FT  ++++ RT ++
Sbjct: 174 YQCCPEPYVDVTFT--IQIRRRTLYY 197


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 521 YDCRDEPTADCWFTEVVEVKSRTQFF 444
           Y C  EP  D  FT  ++++ RT ++
Sbjct: 242 YQCCPEPYVDVTFT--IQIRRRTLYY 265


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 521 YDCRDEPTADCWFTEVVEVKSRTQFF 444
           Y C  EP  D  FT  ++++ RT ++
Sbjct: 242 YQCCPEPYVDVTFT--IQIRRRTLYY 265


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 527 K*YDCRDEPTADCWFTEVVEVKSRTQFFS 441
           K Y C DEP  D +F   + ++ +T F++
Sbjct: 213 KYYPCCDEPYPDIFFN--ITLRRKTLFYT 239


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 521 YDCRDEPTADCWFTEVVEVKSRTQFFS 441
           Y+C  EP  D  F  ++  ++   FF+
Sbjct: 211 YNCCPEPYIDITFVVIIRRRTLYYFFN 237


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 369 LYIIFKFLDCNLSFC 325
           LY++F  L   LSFC
Sbjct: 140 LYLLFATLPLRLSFC 154


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +1

Query: 214 VVILDALRVVCSLCVA 261
           + I++ + ++C+LC+A
Sbjct: 204 IAIVELIGIICALCLA 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,426
Number of Sequences: 438
Number of extensions: 3541
Number of successful extensions: 31
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)