Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1470
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    26   6.6  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   8.7  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    25   8.7  

>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 440 TPLP*CSCTHIDTLVSL*SSASGYSRK 520
           T LP C+C  +D  V+L  SAS   RK
Sbjct: 295 TALPICACASVDGTVALYDSASLKFRK 321


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 257 NTTQRQLNEMLIXRGKQKKHRQLRFEKLKCLNLGVKNNI 141
           N    QLNE  I + K K+  QL  EK++    G+K  I
Sbjct: 730 NFASNQLNEAKIEQAKFKRDEQLLVEKIE----GIKKRI 764


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 645 VDSN--SNPPKEFXKDLQRVMRKKWQVAQKCKL-EPATTPH 532
           +DSN  +NPP +F K  QR  +  +++   C L +  TT H
Sbjct: 168 LDSNEENNPPIKFLKVFQRARQLGYRLTCHCDLHQKNTTTH 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,635
Number of Sequences: 5004
Number of extensions: 41203
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)