Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1470
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2943|AAN09520.1| 1034|Drosophila melanogaster CG11940-P...   100   4e-21
AE014298-2942|AAF49029.1| 1162|Drosophila melanogaster CG11940-P...   100   4e-21
AY119138-1|AAM50998.1|  696|Drosophila melanogaster RE37995p pro...    29   6.8  
X05136-1|CAA28782.1|  590|Drosophila melanogaster protein ( Dros...    29   8.9  
AE014297-4239|AAF56796.2|  696|Drosophila melanogaster CG12413-P...    29   8.9  
AE014297-519|AAF54083.2|  586|Drosophila melanogaster CG2189-PA ...    29   8.9  
AE001572-6|AAD19796.1|  586|Drosophila melanogaster homeodomain ...    29   8.9  

>AE014298-2943|AAN09520.1| 1034|Drosophila melanogaster CG11940-PB,
            isoform B protein.
          Length = 1034

 Score = 99.5 bits (237), Expect = 4e-21
 Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 16/109 (14%)
 Frame = -1

Query: 672  STYITEKKLVDSNSNPPKEFXKDLQRVMRKKWQVAQKCKLEPATTPHEVLGFREYPLAD- 496
            S   + K+L +S SNPP++F KDLQRVMRKKWQVAQKCK EPATTPHEVLGFR++   D 
Sbjct: 882  SEVTSPKRLQESASNPPRDFLKDLQRVMRKKWQVAQKCKAEPATTPHEVLGFRDFSNEDL 941

Query: 495  --------------DYKET-SVSMWVQEHYGSGVEDPXYENVYSAEQTA 394
                           Y+ET +VS WV++HY     +  YENV++    A
Sbjct: 942  LAAHNLNSGANSSHYYRETANVSHWVRKHY-EYAHNALYENVHAQSAAA 989


>AE014298-2942|AAF49029.1| 1162|Drosophila melanogaster CG11940-PA,
            isoform A protein.
          Length = 1162

 Score = 99.5 bits (237), Expect = 4e-21
 Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 16/109 (14%)
 Frame = -1

Query: 672  STYITEKKLVDSNSNPPKEFXKDLQRVMRKKWQVAQKCKLEPATTPHEVLGFREYPLAD- 496
            S   + K+L +S SNPP++F KDLQRVMRKKWQVAQKCK EPATTPHEVLGFR++   D 
Sbjct: 1010 SEVTSPKRLQESASNPPRDFLKDLQRVMRKKWQVAQKCKAEPATTPHEVLGFRDFSNEDL 1069

Query: 495  --------------DYKET-SVSMWVQEHYGSGVEDPXYENVYSAEQTA 394
                           Y+ET +VS WV++HY     +  YENV++    A
Sbjct: 1070 LAAHNLNSGANSSHYYRETANVSHWVRKHY-EYAHNALYENVHAQSAAA 1117


>AY119138-1|AAM50998.1|  696|Drosophila melanogaster RE37995p
           protein.
          Length = 696

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 549 PATTPHEVLGFREYPLADD 493
           P  TP E+LG+RE PLA D
Sbjct: 393 PPDTPVEILGWRELPLAGD 411


>X05136-1|CAA28782.1|  590|Drosophila melanogaster protein (
           Drosophila mRNA forDeformed (Dfd) protein. ).
          Length = 590

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 672 STYITEKKLVDSNSNPPKEFXKDLQRVMRKKWQVAQK 562
           +T    KK VD+N NP     K  +R   KK Q AQ+
Sbjct: 429 NTKNVRKKTVDANGNPTPVAKKPTKRAASKKQQQAQQ 465


>AE014297-4239|AAF56796.2|  696|Drosophila melanogaster CG12413-PA
           protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 549 PATTPHEVLGFREYPLADD 493
           P  TP E+LG+RE PLA D
Sbjct: 393 PPGTPVEILGWRELPLAGD 411


>AE014297-519|AAF54083.2|  586|Drosophila melanogaster CG2189-PA
           protein.
          Length = 586

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 672 STYITEKKLVDSNSNPPKEFXKDLQRVMRKKWQVAQK 562
           +T    KK VD+N NP     K  +R   KK Q AQ+
Sbjct: 429 NTKNVRKKTVDANGNPTPVAKKPTKRAASKKQQQAQQ 465


>AE001572-6|AAD19796.1|  586|Drosophila melanogaster homeodomain
           protein protein.
          Length = 586

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 672 STYITEKKLVDSNSNPPKEFXKDLQRVMRKKWQVAQK 562
           +T    KK VD+N NP     K  +R   KK Q AQ+
Sbjct: 429 NTKNVRKKTVDANGNPTPVAKKPTKRAASKKQQQAQQ 465


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,785,100
Number of Sequences: 53049
Number of extensions: 477493
Number of successful extensions: 1606
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)