Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1470
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U28992-2|AAA68390.1|  145|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL021488-4|CAA16363.2|  531|Caenorhabditis elegans Hypothetical ...    28   6.2  

>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 644 SIQTVILQRNX*KICRG*CGKNGKSHKSVNSN-RQQLRTRYLVSVNIHLRMITKRRACRC 468
           S++ + LQ+N   + +G  GK G  +K       + +R RYL+  +     +     CRC
Sbjct: 212 SVEPLTLQQNDASVAKG--GKTGDGNKGKGPVCYRTIRHRYLLGADFEEHDVDSVNDCRC 269

Query: 467 GC 462
            C
Sbjct: 270 LC 271


>U28992-2|AAA68390.1|  145|Caenorhabditis elegans Hypothetical
           protein T05C1.2 protein.
          Length = 145

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 544 CRFEFTLLCDLPFFPHHPLQIF 609
           C FE   L D  FFPHH  Q+F
Sbjct: 36  CFFEHLSLYDHSFFPHHSSQMF 57


>AL021488-4|CAA16363.2|  531|Caenorhabditis elegans Hypothetical
           protein Y45F10A.7a protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
 Frame = -1

Query: 606 DLQRVMRK--KWQVA------QKCKLEPATTPHEV--LGFREYPLADDYKETSVSMWVQE 457
           DL+RV+ +  KW+        +KC       PH +  +GF EY   ++ K     +WV +
Sbjct: 83  DLERVIGETNKWESLVEHVRREKCTNGGPIVPHPMNAIGFEEYETENNNKCCDEVLWVPD 142

Query: 456 HYGSGVED 433
            Y   V D
Sbjct: 143 EYSKLVRD 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,194,223
Number of Sequences: 27780
Number of extensions: 241858
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)