Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1469
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    42   7e-05
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.6  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   8.7  

>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 878

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
 Frame = -1

Query: 543  AIFPXDNLWYRAXILQYSXTQNRIKVRFVDYGNIXVISPADVREIKDEWAELPPVTISAK 364
            AI   DN  YR  +L+         V   DYG++  I   ++  + D + +L P    A+
Sbjct: 704  AISALDNAMYRGRVLRCDRENQAADVLLYDYGSVEQIPFKNISSLPDTYTKLKPQAQLAR 763

Query: 363  LYNVQLSPDAE--MNSIVKVYXDVLLDKGPFHTKIIEYENDIPCVELRNDNN 214
            L  VQL P +         V+ ++ ++KG    K+  +E ++  V L N ++
Sbjct: 764  LSYVQLPPPSSDYYEDARLVFRELAMNKG-LVAKVDGHEGNVYSVTLYNPSD 814


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 214 CLDKQNAYKKYRIP*GICL*RQLSLFYFFYQKLAFCY 104
           CL     Y    +P  +CL   L+  Y+F++ L  CY
Sbjct: 492 CLVDSARYSTANVP-PLCLDALLNFIYYFHEHLQPCY 527


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 516 YRAXILQYSXTQNRIKVRFVDYGN 445
           Y   + Q   TQ RI+  F+DYGN
Sbjct: 489 YMFVLEQEEYTQERIEWDFIDYGN 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,835
Number of Sequences: 5004
Number of extensions: 48540
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)