Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1469
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310...    36   0.026
08_01_0071 - 507595-507762,508027-508155,508567-508752,509306-50...    36   0.045
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203...    29   3.0  
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273...    28   6.9  
11_06_0463 + 23879587-23879771,23879783-23881658                       28   9.1  

>04_03_0813 - 19929562-19929798,19930209-19930580,19930686-19931039,
            19931120-19931188,19931294-19931479,19932762-19932989,
            19933655-19934020,19934154-19934354,19934923-19935093,
            19935178-19935285,19935423-19935635,19936093-19936299,
            19936485-19936586,19936714-19936902,19937766-19937933
          Length = 1056

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
 Frame = -1

Query: 546  IAIFPXDNLWYRAXIL-QYSXTQN-RIKVRFVDYGNIXVISPADVREIKDEWAELPPVTI 373
            +A+F  DN W RA I+ +    +    +V ++DYGN  ++  + +R I    + +PP+  
Sbjct: 841  LALFRCDNSWNRAMIIGECQGVEGPEFEVFYIDYGNQELVPHSCLRPINLSISSIPPLAK 900

Query: 372  SAKLYNVQL-SPDAEMNSIVKVYXD-VLLDKGPFHTKIIE 259
               L  V++ S +  +     +Y + +LLD G     I+E
Sbjct: 901  LCSLAFVKVPSLNDYLGQEAAMYLNSILLDNGREFEAIVE 940


>08_01_0071 -
           507595-507762,508027-508155,508567-508752,509306-509381,
           509477-509559,509778-509885,510420-510497,511762-511827
          Length = 297

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -1

Query: 543 AIFPXDNLWYRAXILQYSXTQNRIKVRFVDYGNIXVISPADVREIKDEWAE 391
           A++  D  WY A I +   T+N   V F  +GN   + PA+VR +++E A+
Sbjct: 104 AVWSEDGEWYNATIEEL--TENGYYVSFEGWGNKEEVDPANVRSLEEEAAD 152


>02_04_0039 -
           19118632-19118820,19119018-19119395,19120151-19120345,
           19120425-19120502,19120567-19120752,19120828-19121058,
           19121137-19121490,19121588-19121785,19121869-19122039,
           19122156-19122263,19122362-19122580,19122665-19122871,
           19122978-19123196,19123315-19123389,19123749-19123901
          Length = 986

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -1

Query: 546 IAIFPXDNLWYRAXILQ-----YSXTQNRIKVRFVDYGNIXVISPADVR 415
           +A F  DN W RA I+       S   ++ +V ++DYGN  V+  + +R
Sbjct: 785 LAQFSADNSWNRAMIVNGPRGAVSSQDDKFEVFYIDYGNQEVVPYSRIR 833


>04_04_1619 -
           34825922-34825998,34826109-34826200,34827281-34827399,
           34827507-34827734,34827904-34828164,34828258-34828614,
           34828803-34828916,34828990-34829063,34829176-34829359,
           34829685-34829830,34829951-34830309,34835569-34835789
          Length = 743

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 127 KKNKINLVVAKGRCLKECGI 186
           K NKINL  AK  CL EC I
Sbjct: 115 KDNKINLADAKAICLMECPI 134


>11_06_0463 + 23879587-23879771,23879783-23881658
          Length = 686

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 537 ILRYTLYSRIYHLMXACHHLHSGPX*IIGYTAKLFYH 647
           +LR   Y R   +M    HL+SG   + GYT +L Y+
Sbjct: 340 VLRIEGYKRTKMMMATGEHLNSGEFHVGGYTWRLRYY 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,906,304
Number of Sequences: 37544
Number of extensions: 255826
Number of successful extensions: 492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)