Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1469
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   1.3  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.3  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 372 SAKLYNVQLSPDAEMNSIVKVYXDVLLDKGPFHTKIIEYENDIP 241
           + K  NV +        ++  Y + LLD+GP      E + ++P
Sbjct: 25  TTKYDNVDIDVVLNTERLLNAYVNCLLDQGPCTPDAAELKRNLP 68


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 372 SAKLYNVQLSPDAEMNSIVKVYXDVLLDKGPFHTKIIEYENDIP 241
           + K  NV +        ++  Y + LLD+GP      E + ++P
Sbjct: 25  TTKYDNVDIDVVLNTERLLNAYVNCLLDQGPCTPDAAELKRNLP 68


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 377  VTGGNSAHSSLISLTSAGEIT 439
            V G N A  + ++LT  GE++
Sbjct: 1577 VAGSNQAEFTFVTLTKEGELS 1597


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 377  VTGGNSAHSSLISLTSAGEIT 439
            V G N A  + ++LT  GE++
Sbjct: 1573 VAGSNQAEFTFVTLTKEGELS 1593


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 719 KWKNSDVIFXXLTIRTYWNLVYYXM 645
           K K  DV+    TI TY + V+Y +
Sbjct: 315 KDKPEDVLIIIYTILTYMSGVFYYL 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,373
Number of Sequences: 438
Number of extensions: 4076
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)