Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1467
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    37   0.004
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    29   0.94 
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.6  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   8.7  

>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +2

Query: 62  VLVLYEFFRKNSNTNSLRITNIFTYMRY*LAATQRFSID*KQ*CQLLGSAHQFNKSXMXA 241
           ++ LY FF    +T  ++   +   M      TQ+      Q  QL G AH+FN+     
Sbjct: 46  LIYLYSFFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHKFNEDAKTD 105

Query: 242 LHNQLQNHMILHLIA 286
           L N ++ H  L  +A
Sbjct: 106 LRNSIKQHQQLKELA 120


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 477 HFSLVPEAKAEXKIVQNFILKEVFNVLSILNLSFVGIENFHFFLXSGSEFDIIM-*CIFD 301
           + SL P+ +A         L+E+    ++L + F+G   FH  L + +  +I++  C  +
Sbjct: 101 YVSLSPQVRANLAAYYGLSLQEI---QAVLEMVFIGKLGFHAILDTNASREIVLQQCAQE 157

Query: 300 FCTHY 286
           FC  +
Sbjct: 158 FCNSW 162


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 207 PHTNLTSHXXQHYIISF 257
           PHT  ++H   H+IISF
Sbjct: 3   PHTAFSNHIHYHFIISF 19


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 366 ENFHFFLXSGSEFDIIM*CIFDFCTHYAIK 277
           ENFH     G   +    C+++   H+A+K
Sbjct: 68  ENFHILFMQGGGTEQFAACLYNVYAHHALK 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,060
Number of Sequences: 5004
Number of extensions: 39590
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)