Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1467
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14...    31   0.98 
12_01_0650 + 5500662-5501206,5502485-5502563,5503100-5503308,550...    28   6.9  
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739...    28   6.9  

>11_01_0021 -
           143576-143932,144434-144667,144988-145066,145138-145253,
           145717-145861,146048-146465,147206-147869
          Length = 670

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 212 HQFNKSXMXALHNQLQNHMILHLIA*XVQKSKIHYIIMSNSLPLXKKK 355
           HQ       A HN L NH++ H     +  +K H+    ++LP  K K
Sbjct: 78  HQLLLCIGIAFHNLLDNHLLHHFHTLLIHANKPHFDAFLSNLPFAKLK 125


>12_01_0650 +
           5500662-5501206,5502485-5502563,5503100-5503308,
           5504396-5505146
          Length = 527

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -1

Query: 468 LVPEAKAEXKIVQNFILKEVFNVLSILNLSFVGIENFHFFLXSGSEFDIIM*CIFDFCT 292
           L+P+   E K  Q+ + +E    LS  +   + + NFHF    G E+ ++   I+D  T
Sbjct: 385 LIPQTTGEAKRTQD-VGEEYLIQLSRKSFVDLKLRNFHFGRNEGHEYYVMHDLIYDLAT 442


>07_03_1567 -
           27772815-27773302,27773471-27773561,27773641-27773988,
           27774929-27775110,27775191-27775368,27775453-27775605,
           27775993-27776232,27776369-27776449,27776485-27776730,
           27777151-27777240,27777536-27777778,27778365-27778529,
           27779017-27779080,27779162-27779286,27779383-27779476,
           27779647-27779714,27779798-27779989,27780618-27780752,
           27780847-27780934,27781014-27781107,27781484-27781547,
           27781657-27781708,27781911-27782014,27782099-27782158,
           27782687-27782770,27782892-27783125,27783442-27783864,
           27784675-27784736,27784867-27785521
          Length = 1700

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = +2

Query: 218 FNKSXMXALHNQLQNHMILHLIA*XVQKS---KIHYIIMSNSLPLXKKKWKF 364
           FN++ +  LH +L+ H++  +I   V+KS   KI  I+  +  PL K+ +K+
Sbjct: 799 FNETELANLHKELRPHILRRVIK-DVEKSLPPKIERILRVDMSPLQKQYYKW 849


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,534,892
Number of Sequences: 37544
Number of extensions: 207305
Number of successful extensions: 226
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)