Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1466
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321448-1|AAM13395.1|  509|Drosophila melanogaster nicotinic ac...    29   5.5  
AF321447-1|AAM13394.1|  494|Drosophila melanogaster nicotinic ac...    29   5.5  
AF321445-1|AAM13392.1|  494|Drosophila melanogaster nicotinic ac...    29   5.5  
AE014134-1706|AAS64672.1|  509|Drosophila melanogaster CG4128-PD...    29   5.5  
AE014134-1704|AAF52817.3|  494|Drosophila melanogaster CG4128-PA...    29   5.5  
AE014134-1702|AAN10709.2|  494|Drosophila melanogaster CG4128-PC...    29   5.5  
BT011147-1|AAR82815.1|  508|Drosophila melanogaster GH15518p pro...    29   7.2  
AJ554209-1|CAD86935.1|  494|Drosophila melanogaster nicotinic ac...    29   7.2  
AF321446-1|AAM13393.1|  494|Drosophila melanogaster nicotinic ac...    29   7.2  
AE014134-1703|AAS64670.1|  494|Drosophila melanogaster CG4128-PB...    29   7.2  

>AF321448-1|AAM13395.1|  509|Drosophila melanogaster nicotinic
           acetylcholine receptorDalpha6 subunit variant type IV
           protein.
          Length = 509

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -3

Query: 306 IFVSIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQ 130
           I  +I+ +R TLYYFFN  V  +      L+ F           L  TI+++  V L L 
Sbjct: 242 ITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLV 301

Query: 129 AEFILKNNSLQLNSYKDYF-CISFAI 55
           AE  L   S  +     YF CI F +
Sbjct: 302 AE-TLPQVSDAIPLLGTYFNCIMFMV 326


>AF321447-1|AAM13394.1|  494|Drosophila melanogaster nicotinic
           acetylcholine receptorDalpha6 subunit variant type III
           protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -3

Query: 306 IFVSIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQ 130
           I  +I+ +R TLYYFFN  V  +      L+ F           L  TI+++  V L L 
Sbjct: 227 ITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLV 286

Query: 129 AEFILKNNSLQLNSYKDYF-CISFAI 55
           AE  L   S  +     YF CI F +
Sbjct: 287 AE-TLPQVSDAIPLLGTYFNCIMFMV 311


>AF321445-1|AAM13392.1|  494|Drosophila melanogaster nicotinic
           acetylcholine receptorDalpha6 subunit variant type I
           protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -3

Query: 306 IFVSIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQ 130
           I  +I+ +R TLYYFFN  V  +      L+ F           L  TI+++  V L L 
Sbjct: 227 ITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLV 286

Query: 129 AEFILKNNSLQLNSYKDYF-CISFAI 55
           AE  L   S  +     YF CI F +
Sbjct: 287 AE-TLPQVSDAIPLLGTYFNCIMFMV 311


>AE014134-1706|AAS64672.1|  509|Drosophila melanogaster CG4128-PD,
           isoform D protein.
          Length = 509

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -3

Query: 306 IFVSIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQ 130
           I  +I+ +R TLYYFFN  V  +      L+ F           L  TI+++  V L L 
Sbjct: 242 ITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLV 301

Query: 129 AEFILKNNSLQLNSYKDYF-CISFAI 55
           AE  L   S  +     YF CI F +
Sbjct: 302 AE-TLPQVSDAIPLLGTYFNCIMFMV 326


>AE014134-1704|AAF52817.3|  494|Drosophila melanogaster CG4128-PA,
           isoform A protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -3

Query: 306 IFVSIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQ 130
           I  +I+ +R TLYYFFN  V  +      L+ F           L  TI+++  V L L 
Sbjct: 227 ITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLV 286

Query: 129 AEFILKNNSLQLNSYKDYF-CISFAI 55
           AE  L   S  +     YF CI F +
Sbjct: 287 AE-TLPQVSDAIPLLGTYFNCIMFMV 311


>AE014134-1702|AAN10709.2|  494|Drosophila melanogaster CG4128-PC,
           isoform C protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -3

Query: 306 IFVSIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQ 130
           I  +I+ +R TLYYFFN  V  +      L+ F           L  TI+++  V L L 
Sbjct: 227 ITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLV 286

Query: 129 AEFILKNNSLQLNSYKDYF-CISFAI 55
           AE  L   S  +     YF CI F +
Sbjct: 287 AE-TLPQVSDAIPLLGTYFNCIMFMV 311


>BT011147-1|AAR82815.1|  508|Drosophila melanogaster GH15518p
           protein.
          Length = 508

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -3

Query: 306 IFVSIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQ 130
           I  +I+ +R TLYYFFN  V  +      L+ F           L  TI+++  V L L 
Sbjct: 241 ITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLV 300

Query: 129 AEFILKNNSLQLNSYKDYF-CISFAI 55
           AE  +   S  +     YF CI F +
Sbjct: 301 AE-SMPTTSDAVPLIGTYFNCIMFMV 325


>AJ554209-1|CAD86935.1|  494|Drosophila melanogaster nicotinic
           acetylcholine receptorsubunit Dalpha6 protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -3

Query: 306 IFVSIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQ 130
           I  +I+ +R TLYYFFN  V  +      L+ F           L  TI+++  V L L 
Sbjct: 227 ITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLV 286

Query: 129 AEFILKNNSLQLNSYKDYF-CISFAI 55
           AE  +   S  +     YF CI F +
Sbjct: 287 AE-SMPTTSDAVPLIGTYFNCIMFMV 311


>AF321446-1|AAM13393.1|  494|Drosophila melanogaster nicotinic
           acetylcholine receptorDalpha6 subunit variant type II
           protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -3

Query: 306 IFVSIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQ 130
           I  +I+ +R TLYYFFN  V  +      L+ F           L  TI+++  V L L 
Sbjct: 227 ITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLV 286

Query: 129 AEFILKNNSLQLNSYKDYF-CISFAI 55
           AE  +   S  +     YF CI F +
Sbjct: 287 AE-SMPTTSDAVPLIGTYFNCIMFMV 311


>AE014134-1703|AAS64670.1|  494|Drosophila melanogaster CG4128-PB,
           isoform B protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -3

Query: 306 IFVSIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQ 130
           I  +I+ +R TLYYFFN  V  +      L+ F           L  TI+++  V L L 
Sbjct: 227 ITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLV 286

Query: 129 AEFILKNNSLQLNSYKDYF-CISFAI 55
           AE  +   S  +     YF CI F +
Sbjct: 287 AE-SMPTTSDAVPLIGTYFNCIMFMV 311


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,531,123
Number of Sequences: 53049
Number of extensions: 348610
Number of successful extensions: 552
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)