Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1466
(650 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.039
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.039
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.039
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.039
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.052
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.052
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.052
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.052
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 26 0.27
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 23 3.4
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 7.8
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 7.8
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.039
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -3
Query: 297 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQAEF 121
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 245
Query: 120 ILKNNSLQLNSYKDYF-CISFAI 55
L S + YF CI F +
Sbjct: 246 TLPQVSDAIPLLGSYFNCIMFMV 268
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.039
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -3
Query: 297 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQAEF 121
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 245
Query: 120 ILKNNSLQLNSYKDYF-CISFAI 55
L S + YF CI F +
Sbjct: 246 TLPQVSDAIPLLGSYFNCIMFMV 268
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.039
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -3
Query: 297 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQAEF 121
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 245
Query: 120 ILKNNSLQLNSYKDYF-CISFAI 55
L S + YF CI F +
Sbjct: 246 TLPQVSDAIPLLGSYFNCIMFMV 268
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.1 bits (62), Expect = 0.039
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -3
Query: 297 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQAEF 121
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 255 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 313
Query: 120 ILKNNSLQLNSYKDYF-CISFAI 55
L S + YF CI F +
Sbjct: 314 TLPQVSDAIPLLGSYFNCIMFMV 336
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.052
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -3
Query: 297 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQAEF 121
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 245
Query: 120 ILKNNSLQLNSYKDYF-CISFAI 55
+ S + YF CI F +
Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMV 268
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.052
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -3
Query: 297 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQAEF 121
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 245
Query: 120 ILKNNSLQLNSYKDYF-CISFAI 55
+ S + YF CI F +
Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMV 268
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.052
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -3
Query: 297 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQAEF 121
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 245
Query: 120 ILKNNSLQLNSYKDYF-CISFAI 55
+ S + YF CI F +
Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMV 268
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.7 bits (61), Expect = 0.052
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -3
Query: 297 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVMLGLQAEF 121
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 255 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 313
Query: 120 ILKNNSLQLNSYKDYF-CISFAI 55
+ S + YF CI F +
Sbjct: 314 SMPTTSDAVPLIGSYFNCIMFMV 336
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 26.2 bits (55), Expect = 0.27
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = -3
Query: 315 INLIFVSIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKXIFDNAHFLL-*TIMVNPHVML 139
I++ FV I +R TLYYFFN V + ++ F L TI+++ V L
Sbjct: 219 IDITFVVI-IRRRTLYYFFNLIVPCVLIASMAVLGFTLPPDSGEKLSLGVTILLSLTVFL 277
Query: 138 GLQAEFILKNNSLQLNSYKDYF-CISFAI 55
+ AE + S + YF CI F +
Sbjct: 278 NMVAE-TMPATSDAVPLLGTYFNCIMFMV 305
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 22.6 bits (46), Expect = 3.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 551 VNLLQPFENTNW 586
V+ LQPF NT W
Sbjct: 558 VSFLQPFSNTLW 569
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 593 LYVVWSSCLFCL 628
L VVW C FC+
Sbjct: 213 LAVVWIMCYFCI 224
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 593 LYVVWSSCLFCL 628
L VVW C FC+
Sbjct: 266 LAVVWIMCYFCI 277
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,770
Number of Sequences: 438
Number of extensions: 2301
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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