Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1465
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   2.3  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   3.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   3.1  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   5.4  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   7.1  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    25   7.1  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   7.1  

>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 372 PNRRPMGFPFDQPSNSATSLQDFILPNMGLQDITIQLQNVTEPN 241
           P+  P  F   Q S+S  +  DF + N+G +  +I   N+  P+
Sbjct: 133 PSNSPQAFDLTQGSSSTHNANDFTVNNVGSRRQSIYEFNIGIPS 176


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 336 PSNSATSLQDFILPNMGLQDITIQLQNVT-EPNPRNPPMSV*NVAKLK*NTRLKPQIRF 163
           PS+  +S   F        D      ++T +P+PR+P      +  LK NTR  P+IR+
Sbjct: 79  PSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRSP------LTPLKGNTRASPEIRY 131


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 351  FPFDQPSNSATSLQDFILPNMGLQDITI 268
            F   +P N+ATS+Q+ I P +   D  I
Sbjct: 1224 FEIPEPCNTATSVQELINPEINQDDSPI 1251


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 269 IVMSCKPMFGKMKSWRLVALFEG*SNGNPIGRLLGYW 379
           + M+C  + G +  W++        + NP GRL+G W
Sbjct: 371 VFMNCLTLAGCLMIWKI-------PDSNPYGRLVGVW 400


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 435 DGQHLTCVKXSSFYXLKXXQYPNRRP 358
           DGQ +TCVK +  +  K  Q  +  P
Sbjct: 552 DGQRITCVKGAPLWVFKTVQDDHEVP 577


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 360 PMGFPFDQPSNSATSLQDFIL 298
           PMGF F  P+N  +  + ++L
Sbjct: 138 PMGFTFSYPANQVSITESYLL 158


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 396 YXLKXXQYPNRRPMGFPFDQPSNSATSLQDFILPNMGLQDITIQL 262
           Y +    YPN+   G+P +    +  S  + IL N  L+++ +Q+
Sbjct: 64  YAMPTMFYPNKPTPGWPLNYVFGNERSRFEKILSNFVLRNLMLQV 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,764
Number of Sequences: 5004
Number of extensions: 29660
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)