Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1465
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    30   0.89 
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    29   1.2  
U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    28   2.7  
Z81470-7|CAB03885.1|  129|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = -1

Query: 336 PSNSATSLQDFILPNMG--LQDIT---IQLQNVTEPNPRNPP 226
           P    T +Q  I+P MG  LQDI    + L++V E NPR+PP
Sbjct: 296 PKGYLTDMQS-IIPQMGGDLQDIKKARMLLKSVRETNPRHPP 336


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 308 TSFYQTWACRTSLFNCKTSPNLTHGTLPCLFKMSQN-*NEIRVLNHKFDF 162
           T+ Y     R +L+N   S    H  LPC  ++ +N  N++RVL  +F +
Sbjct: 827 TNRYSDDFYRAALYNSLASSVFPHDALPCHVELPENLSNDVRVLIKEFTY 876


>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 321 TSLQDFILPNMGLQDITIQLQNVTEPNPRNP 229
           ++++ F+LPN   + IT+QL  V  P+ RNP
Sbjct: 206 STVRAFLLPNF--EYITLQLSGVRAPSTRNP 234


>Z81470-7|CAB03885.1|  129|Caenorhabditis elegans Hypothetical
           protein C14A6.8 protein.
          Length = 129

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 357 MGFPFDQPSNSATSLQDFILPNMGLQDITIQLQNVTEPNPRNPPMSV 217
           MG PF  P+N+          N+ + D         EP P  PP++V
Sbjct: 1   MGDPFFDPTNNLLKSDGNEYQNLAILDPNAPAVGGNEPPPPPPPLTV 47


>AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41D4B.18 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 336 PSNSATSLQDFILPNMGLQDITIQLQNVTEPNPRNPP 226
           P+NS T+      P    Q ++    + + P P NPP
Sbjct: 258 PTNSTTNPPTATSPKTSSQPVSSSTSSTSSPAPTNPP 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,767,039
Number of Sequences: 27780
Number of extensions: 174323
Number of successful extensions: 313
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)