Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1464
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   5.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.0  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.3  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 489 LYQYNVLRYSFP 454
           +Y +NV+ Y+FP
Sbjct: 21  IYSWNVIEYNFP 32


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +2

Query: 14  FLYMS*CEYTNYG*TTFRKGRLILYYTHYFIVITLI 121
           + Y +   Y NY    +      LYY +Y I I  I
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINIEQI 357


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 430 SYKLINNIFSEELSVIINRSILQCVITYIDSGL 332
           S  L+  +F   + + +  +IL CV  Y D GL
Sbjct: 24  SVLLVGFLFLILIFLSVAGNILVCVAIYTDRGL 56


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 312 TSAYSPYKPES 344
           TS+Y PY P S
Sbjct: 138 TSSYDPYSPNS 148


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 231 IMYVVCSTYLRSAS 272
           I Y VCS YLR  S
Sbjct: 930 IHYGVCSNYLREIS 943


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 68 YGTWFIHSLCIHITTY 21
          Y T + HSL +H+  Y
Sbjct: 52 YATKYCHSLKLHLRKY 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,512
Number of Sequences: 438
Number of extensions: 2468
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)