Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1461
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    73   5e-14
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   9.5  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   9.5  

>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
 Frame = -3

Query: 558 VRNYADA-PKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGXLPKHVPTLAVFRPGV 382
           +R YA A  K +++ L+ A   +  Y+K  V Q+D+P+  G  G L  HVP +   +PGV
Sbjct: 18  IRGYAQAVQKNEKLVLSMALPYQTIYEKVPVTQVDIPAEDGEMGILKDHVPMIQCLKPGV 77

Query: 381 VTIXENDGKQNKXFVSXGXITVNDDSSVQVLAEXAXPXXSIDRSAAQEALSKAQSEFNS 205
           +++ +    ++K F+S G       + + +    A        S A + L K ++E NS
Sbjct: 78  ISVTDESSNKSKYFISGGFAVQQPSNELSITVPEAYKLEDFSSSVANQLLEKHKAEMNS 136


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 548 MQMLPKVTKWH*PSLRVIRXFMTNKLSNK 462
           +Q  P + +W   +LR +  F+TNKL NK
Sbjct: 336 LQPCPSLAEWD--ALRKVWLFITNKLLNK 362


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 477 VCHKXPYYPQRRSMPFRHLWEHLHSYVLEADEL 575
           +C K  ++PQ RS  F+ L+ +L  + ++  +L
Sbjct: 515 LCMKVAHFPQFRSCVFQRLFTNLQHWDVKVQQL 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,893
Number of Sequences: 5004
Number of extensions: 39178
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)