Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1461
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0467 - 18479199-18479543,18481145-18481417                       60   3e-09
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073...    29   4.3  

>07_03_0467 - 18479199-18479543,18481145-18481417
          Length = 205

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 36/120 (30%), Positives = 60/120 (50%)
 Frame = -3

Query: 564 LQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGXLPKHVPTLAVFRPG 385
           +Q R    A    ++ + F    K     + V  + VP+ +G  G LP HV T+A  +PG
Sbjct: 61  MQPRPPTPAAIPSKLTVNFVLPYKSEIANKEVDMVIVPATTGQMGVLPGHVSTIAELKPG 120

Query: 384 VVTIXENDGKQNKXFVSXGXITVNDDSSVQVLAEXAXPXXSIDRSAAQEALSKAQSEFNS 205
           V+++ E +    K FVS G   V+ +S   ++A  A P   ID +A Q+ L++  ++  S
Sbjct: 121 VLSVHEGN-DITKYFVSSGFAFVHANSIADIVAVEAVPLDQIDPAAVQQGLAEFNAKLGS 179


>07_03_1343 -
           25905475-25905678,25907025-25907167,25907273-25907366,
           25907526-25907687,25907884-25907952,25908631-25908843,
           25909054-25909113,25909294-25909382,25909745-25910063
          Length = 450

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 420 KHVPTLAVFRPGVVTIXENDGKQNKXF 340
           KH P   ++R G +++ E DGK+NK +
Sbjct: 233 KHPPGDEIYRSGTLSMFEVDGKKNKVY 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,595,116
Number of Sequences: 37544
Number of extensions: 253086
Number of successful extensions: 398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)