Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1461
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical pr...    98   7e-21
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    31   0.96 
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    31   0.96 
U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical p...    30   2.2  
AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical ...    28   8.9  
AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical
           protein F58F12.1 protein.
          Length = 163

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 47/103 (45%), Positives = 64/103 (62%)
 Frame = -3

Query: 528 DEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGXLPKHVPTLAVFRPGVVTIXENDGKQN 349
           +E+ LTFA+ +   +   VVKQ+DVP+ +G  G L  HVPT+ V +PGVV++  N+G   
Sbjct: 29  EELRLTFASPDTAVFSNAVVKQVDVPTLAGMVGVLANHVPTIGVLKPGVVSVTTNEGTVQ 88

Query: 348 KXFVSXGXITVNDDSSVQVLAEXAXPXXSIDRSAAQEALSKAQ 220
           + FVS G ++VN D S QVLAE       ID SAA+  L  AQ
Sbjct: 89  RLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAELDAAQ 131


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -3

Query: 540 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 445
           A KGD++ +  A GN+V   K++V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -3

Query: 540 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 445
           A KGD++ +  A GN+V   K++V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical
           protein F55G1.13 protein.
          Length = 616

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +1

Query: 514 QCHFVTFGSICIVTYLKPTSYISDYTTECQCHSDYLSFLIQIITNGNLLSAISSCR 681
           QC F  +G  C  T    TSY+  +       SDY  +   I T  +   A+ S R
Sbjct: 163 QCPFDYYGDKCQTTRSVQTSYVGCFDDSSASFSDYYVYSTTITTGTDCRDALISYR 218


>AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3b protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 498 YPQRRSMPFRHLWEHLHSYVLEADE---LHF*LHHGMPV 605
           YP RR  PF H  EH +S V   +E     F L +G+P+
Sbjct: 57  YPYRRVEPFEHTSEHGYSSVERYNEEVATRFLLGNGLPL 95


>AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3a protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 498 YPQRRSMPFRHLWEHLHSYVLEADE---LHF*LHHGMPV 605
           YP RR  PF H  EH +S V   +E     F L +G+P+
Sbjct: 107 YPYRRVEPFEHTSEHGYSSVERYNEEVATRFLLGNGLPL 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,713,399
Number of Sequences: 27780
Number of extensions: 235981
Number of successful extensions: 395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)