Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1460
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0702 - 22278513-22278751,22279054-22279889,22279932-222799...    30   2.5  
07_03_1253 + 25201629-25202084,25203264-25203399,25204564-252047...    29   3.3  
05_07_0255 + 28703799-28705703                                         28   9.9  
03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,426...    28   9.9  

>12_02_0702 -
           22278513-22278751,22279054-22279889,22279932-22279975,
           22280350-22280463
          Length = 410

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 487 LRTPRGVCRRDVSTRAFVRDELFPH 413
           L+T +GV +RDV++R  VR  + PH
Sbjct: 13  LKTDQGVFKRDVTSRYLVRSSIGPH 37


>07_03_1253 +
           25201629-25202084,25203264-25203399,25204564-25204700,
           25205439-25206121,25206767-25206911,25207669-25207701
          Length = 529

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 228 STDDIPLKRVFPKVCIPELVDVTSERDADEDGHQRRRDGAPR 103
           +TDD+PL  V   V   +  D  +  D DED   RRR    R
Sbjct: 386 ATDDVPLGPVVLFVAPDQEADAAAAADDDEDDKARRRQRRTR 427


>05_07_0255 + 28703799-28705703
          Length = 634

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 146 QMKTATSAAVMEHRVIVRRILFDARGDITSLLD 48
           Q+ T   AA +EH  ++R  L D  G   S+LD
Sbjct: 353 QLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLD 385


>03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,
            4262554-4262718,4262811-4263178,4263225-4263861,
            4263952-4265844,4266325-4266672
          Length = 1482

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -3

Query: 537  NGILSG-AAQRYRESSTGCELRAASVGATY--QLVLLCATSYFLINGTSTF 394
            N  L G AA+  R S     +   S GA Y      LCA ++F+ NG STF
Sbjct: 1120 NRALDGPAAKASRRSQLMGVILGLSQGAMYGAYTATLCAGAHFINNGVSTF 1170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,414,087
Number of Sequences: 37544
Number of extensions: 368895
Number of successful extensions: 1096
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)