Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1460
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92825-8|CAB07316.2|  469|Caenorhabditis elegans Hypothetical pr...    31   0.73 
Z75955-18|CAB00126.2|  469|Caenorhabditis elegans Hypothetical p...    31   0.73 
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z92825-8|CAB07316.2|  469|Caenorhabditis elegans Hypothetical
           protein C13C4.2 protein.
          Length = 469

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +1

Query: 49  SSKDVISPRASNKIRRTITRCSITAALVAVFICVTFAC-HIYEFRNADLWKDSFKRNIIC 225
           S  D+ SP A  KI +++ R    +  +   +C   A  + Y+  + +  K  F+R II 
Sbjct: 57  SPPDISSPFADEKIYKSLPRNKCPSKCL---VCRNPAIGYHYDVPSCNGCKTFFRRTIIT 113

Query: 226 RLEAGQERQKECLTGSRPSISVLQLRLLCCFA 321
             +    +QK+C+ G+ P     +L   C FA
Sbjct: 114 GRKFTCAKQKKCMDGTEPVDMSKRLCRACRFA 145


>Z75955-18|CAB00126.2|  469|Caenorhabditis elegans Hypothetical
           protein C13C4.2 protein.
          Length = 469

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +1

Query: 49  SSKDVISPRASNKIRRTITRCSITAALVAVFICVTFAC-HIYEFRNADLWKDSFKRNIIC 225
           S  D+ SP A  KI +++ R    +  +   +C   A  + Y+  + +  K  F+R II 
Sbjct: 57  SPPDISSPFADEKIYKSLPRNKCPSKCL---VCRNPAIGYHYDVPSCNGCKTFFRRTIIT 113

Query: 226 RLEAGQERQKECLTGSRPSISVLQLRLLCCFA 321
             +    +QK+C+ G+ P     +L   C FA
Sbjct: 114 GRKFTCAKQKKCMDGTEPVDMSKRLCRACRFA 145


>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical protein
            ZK897.1 protein.
          Length = 1396

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 13   LRGVFSLVVVRVSSKDVISPRASNKIRRTITRCSITAALV 132
            L+G   L+  RV  KDV+SP    ++R  I +C   AALV
Sbjct: 911  LKGTLGLLE-RVLMKDVVSPVPPEEVRAVIRKCLEDAALV 949


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
 Frame = +1

Query: 64   ISPRASNKIRRTITRCSITAALVAVF-----ICVTFACHIYEFRNADLWKDSFK 210
            ++P +  K+R T+ +C++ +++V+       +C+  +C +Y   + DL KD+ +
Sbjct: 1165 VNPNSKLKLRATLGQCNLASSIVSDMNISKTLCIFESCRLY--MSNDLTKDAVR 1216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,779,976
Number of Sequences: 27780
Number of extensions: 289840
Number of successful extensions: 826
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)