Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1458
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   138   2e-33
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    28   1.9  
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    28   1.9  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    28   1.9  
Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    26   7.6  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    26   7.6  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  138 bits (333), Expect = 2e-33
 Identities = 61/81 (75%), Positives = 68/81 (83%)
 Frame = -1

Query: 340 VKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSC 161
           V  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y  + LPKLY KLHYC++C
Sbjct: 18  VAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIAC 77

Query: 160 AIHSKVVRNRSKKDRRIRTPP 98
           AIHSKVVRNRS++ RR R PP
Sbjct: 78  AIHSKVVRNRSREARRDRNPP 98


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 176 LLRVMRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTSTGSAK 51
           ++ V + P +S   ++ + QKN Y+S E    GH TS+ +A+
Sbjct: 374 VINVYKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = -1

Query: 340 VKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCVS 164
           +K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H    
Sbjct: 81  LKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY- 139

Query: 163 CAIHSKVV-RNRSKKDRRIRTPPKS 92
           C    K++ + R  K  ++++ P S
Sbjct: 140 CKNREKIIEKQRVSKILKVQSLPSS 164


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = -1

Query: 340 VKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCVS 164
           +K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H    
Sbjct: 199 LKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY- 257

Query: 163 CAIHSKVV-RNRSKKDRRIRTPPKS 92
           C    K++ + R  K  ++++ P S
Sbjct: 258 CKNREKIIEKQRVSKILKVQSLPSS 282


>Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.2 protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -1

Query: 265 NIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNF 86
           N++    +RD N   +   ++L  +   L YC+   +++  V NR      ++T  KS  
Sbjct: 82  NVITCKKLRDKNRNVIKQCYELDLVGTPLSYCIQRKLNADKVANRC-----VKTYLKSKD 136

Query: 85  PRDMSR 68
            R++ R
Sbjct: 137 TRELKR 142


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = -1

Query: 298 KDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNR---S 128
           K  +++K +I++     AV+   +     +   P    +L   +   + SK  +++   S
Sbjct: 67  KTSSLQKDIIKSEDPFVAVKVREETKRREIMDNPLTKMRLQAALKSMMTSKAEKSKEKKS 126

Query: 127 KKDRRIRTPPKSNFPRDMSRPQAVQRK 47
           KKD++ +   +S+   D S  + V+RK
Sbjct: 127 KKDKKKKKKKRSSSSSDESSDERVERK 153


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = -1

Query: 298 KDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNR---S 128
           K  +++K +I++     AV+   +     +   P    +L   +   + SK  +++   S
Sbjct: 67  KTSSLQKDIIKSEDPFVAVKVREETKRREIMDNPLTKMRLQAALKSMMTSKAEKSKEKKS 126

Query: 127 KKDRRIRTPPKSNFPRDMSRPQAVQRK 47
           KKD++ +   +S+   D S  + V+RK
Sbjct: 127 KKDKKKKKKKRSSSSSDESSDERVERK 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,341,494
Number of Sequences: 27780
Number of extensions: 126209
Number of successful extensions: 319
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)