Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1457
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    31   0.14 
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    28   1.8  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.1  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   4.1  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   5.4  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   7.2  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   9.5  

>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 315 QT*QRIVGTEEKSRNSSTVILVMPGETPRVCPGRALLSLSDVP 443
           QT   +  T++     ST+IL+ PG +P   PG + L LS  P
Sbjct: 33  QTTVDVNDTKKSEGLDSTIILLTPGTSPNATPGSSELGLSKKP 75


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
 Frame = -3

Query: 678 IIDTEKFDFQKFSEYYDDYKSAIEFTSGILFLEIVYRL---LVCLFEAI-CLCGNVGQIG 511
           I+D+ KFD++K S+ + ++        G++F E    L     C  + +  + GN    G
Sbjct: 223 IVDSGKFDWKKNSKRFPEFNEPHPGYHGMVFTETFGNLAYAFACRTQTLRDVGGNANPFG 282

Query: 510 G--ATPGKALLGLR----VVTASAILP-VEGRPKETVVLYPGRPLGFPLALLRSLLKN 358
                 G   L LR    V  A A+   +E  PK   V YPG        L +  LKN
Sbjct: 283 VFLLLQGLETLSLRMERHVQNAFALAKYLEKHPKVNWVSYPGLESHVSHKLAKKYLKN 340


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 696 AVDTLXIIDTEKFDFQKFSEYYDDYKSAIEFTSGILFLEIVYRL 565
           A+ T        F+ ++   Y+D ++S  +FTSGIL  ++  +L
Sbjct: 5   AISTARNFKYPLFNCERRFSYFDMFRSKRKFTSGILTEQLALKL 48


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 23/86 (26%), Positives = 35/86 (40%)
 Frame = +2

Query: 245 GNMFSSTTMTPQTIS*PVRLCLNTNITTHSGNRREIKKFFNSDLSNARGNPKGLPG*STT 424
           G++F     T  T + P     +T   T SG     K       +NA  +     G    
Sbjct: 170 GSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGKPASLGSTNNASTSTTANSG---- 225

Query: 425 VSFGRPSTGNMAEAVTTRSPSKAFPG 502
            SFG+P+T +   + TT +PS +  G
Sbjct: 226 FSFGKPATTSAPGSNTTVTPSSSITG 251


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = -3

Query: 654  FQKFSEYYDDYKSAIEFTSGILFLEIVYRLLVCLFEAICLCGNVGQIGGATPGKALLGLR 475
            FQKF + +DD +S+ E   G+ F E++   +   FE + L G++      +       ++
Sbjct: 862  FQKFVQAFDDMESSRE---GLGFRELIPEDIRAHFEDVGLPGDIADYSPISSLSGGQKVK 918

Query: 474  VVTASAI 454
            VV A+ +
Sbjct: 919  VVIAACL 925


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 669 TEKFDFQKFSEYYDDYKSAIEFTSGILFLEIVYRLLVCLFEAICLCG 529
           T+K    K    Y+   S +EF S ++F   V  +L+C F +  L G
Sbjct: 180 TKKQLISKMDSSYNYDTSPLEFNSWLVFRHFVDLILMCDFCSYILMG 226


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 420 VLYPGRPLGFPLALLRSLLKNFLISLLFPLCVVMFVFKHNRTGYDIVCGVIVV 262
           ++Y GR       LLR+ L N      FPLC+     K+N+    I C  I +
Sbjct: 84  IVYGGREQHLMFPLLRAGLTNDSNRETFPLCIK----KYNKIENSIACKYIKI 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,210
Number of Sequences: 5004
Number of extensions: 59942
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)