Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1457
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    29   3.3  
03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216           29   5.7  
01_06_1012 - 33806190-33807875,33807963-33808331                       28   7.5  
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906...    28   7.5  
07_03_0312 + 16606724-16606796,16606885-16607015,16607105-166072...    28   9.9  
05_05_0047 + 21860127-21860735,21862600-21863451                       28   9.9  
03_02_0564 - 9477118-9477200,9477617-9477687,9477799-9477944,947...    28   9.9  
03_01_0296 + 2284385-2285629,2287632-2288594                           28   9.9  

>01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,
            7161372-7162820
          Length = 1057

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
 Frame = +2

Query: 299  RLCLNTNITTHSGNRREIKKFFNSDLSNARGNPKGLPG*STTVSFGRPSTGNMAEAVTTR 478
            +L ++T IT+H  NR+E  +  NS + +A+ N   L   S++  F   S  N      TR
Sbjct: 960  KLGVSTGITSHQMNRKEHFEALNSGMFSAKWNALQLGSVSSSADF--LSARNSIAQSWTR 1017

Query: 479  SPSKAFPGVAPPI*PTFPHRQIA-SNRQTSNLYTISRNN 592
               K    +  P+   F  + I  +N+  ++  TIS +N
Sbjct: 1018 GKGK----MVHPL-DRFVRQDICITNKNPADFTTISNDN 1051


>03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216
          Length = 750

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 397 GVSPGITKITVEEFLDFSSVPTMRCYVCI*TQSHRLRYCLW 275
           GVS  ++ + V EF   S++  +  YV   + + + RY LW
Sbjct: 112 GVSARLSDLAVHEFTRCSNIVVLGLYVLYYSNASQFRYPLW 152


>01_06_1012 - 33806190-33807875,33807963-33808331
          Length = 684

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 369 LLKNFLISLLFPLCVVMFVFKHNRTGYDIVCGVI 268
           L K  L+SLL  + + M+VF  +R G DI+   +
Sbjct: 112 LWKRHLLSLLSQVALAMYVFAKSRPGADILAPAV 145


>01_06_0939 -
           33188620-33189252,33189570-33189680,33190460-33190668,
           33190781-33191078
          Length = 416

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 407 PG*STTVSFGRPSTGNMAEAVTTRSPSKAFPG 502
           PG S ++S   PSTG     V T  P+   PG
Sbjct: 69  PGASASLSLSSPSTGRAVSVVVTAIPALHCPG 100


>07_03_0312 +
           16606724-16606796,16606885-16607015,16607105-16607274,
           16607365-16607511,16608248-16608299,16608725-16608899,
           16609523-16609605,16610528-16610740,16611850-16611981,
           16612517-16612652,16613218-16613273,16613868-16613910,
           16613990-16614435
          Length = 618

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -3

Query: 531 GNVGQIGGATPGKALLGLRVVTASAILPVEGRPKETVVLYPGRPLGFPLALLRSLLK 361
           G  G    +TP           +SA++   GR + + V++ G P G P+    SLL+
Sbjct: 51  GGGGSSSSSTPTPDAAEKHEAPSSAVIKFTGRKQMSPVVFYGSPQGVPVKKPLSLLR 107


>05_05_0047 + 21860127-21860735,21862600-21863451
          Length = 486

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 426 TVVLYPGRPLGFPLALLRSLLKNFLISLLFPLCVVMFVFKHNRTG 292
           T++++   P+GF LALLR+ L     SLL P  V+ + +K    G
Sbjct: 242 TLLVFLWMPVGFALALLRACL-----SLLLPERVLSYAYKLTGVG 281


>03_02_0564 -
           9477118-9477200,9477617-9477687,9477799-9477944,
           9478051-9478128,9478284-9478388,9478647-9478769,
           9479085-9479171,9479272-9479352,9479443-9479512,
           9479604-9479662,9479763-9479831,9479912-9479962,
           9480063-9480107,9480203-9480276,9480544-9480667,
           9480773-9480940
          Length = 477

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -2

Query: 508 SDTWESFTRTSCSHCFGHITRRG-TSERDS-SALPGQTLGVSPGITKITVE 362
           SD W    RTS S  F  IT  G TS  D   AL     G+S  +T  + E
Sbjct: 257 SDVWREMVRTSVSRSFNQITVDGDTSTNDCVIALASGLSGLSSILTHDSTE 307


>03_01_0296 + 2284385-2285629,2287632-2288594
          Length = 735

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 397 GVSPGITKITVEEFLDFSSVPTMRCYVCI*TQSHRLRYCLW 275
           GVS  ++ + V EF   S++  +  YV   + + + RY LW
Sbjct: 111 GVSARLSDLAVHEFTRCSNIVVLGLYVRYYSHASQFRYPLW 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,461,360
Number of Sequences: 37544
Number of extensions: 350187
Number of successful extensions: 854
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)