Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1457
(800 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC047881-1|AAH47881.1| 413|Homo sapiens family with sequence si... 103 6e-22
AL138824-5|CAI12251.1| 413|Homo sapiens family with sequence si... 103 6e-22
AF097027-1|AAF07850.1| 413|Homo sapiens autosomal highly conser... 103 6e-22
AF097026-1|AAF07849.1| 413|Homo sapiens autosomal highly conser... 103 6e-22
BC146759-1|AAI46760.1| 1523|Homo sapiens slit homolog 3 (Drosoph... 30 8.5
AY358884-1|AAQ89243.1| 1523|Homo sapiens SLIT3 protein. 30 8.5
AF075240-1|AAD19336.1| 850|Homo sapiens SLIT1 protein protein. 30 8.5
AB017169-1|BAA35186.1| 1523|Homo sapiens Slit-3 protein protein. 30 8.5
AB011538-1|BAA32466.2| 1559|Homo sapiens MEGF5 protein. 30 8.5
>BC047881-1|AAH47881.1| 413|Homo sapiens family with sequence
similarity 8, member A1 protein.
Length = 413
Score = 103 bits (248), Expect = 6e-22
Identities = 61/170 (35%), Positives = 88/170 (51%)
Frame = -3
Query: 762 RLXAEXIDXXXXXXXXXXXXXVAVDTLXIIDTEKFDFQKFSEYYDDYKSAIEFTSGILFL 583
R AE +D + I D KF E D+ +++E ++ +
Sbjct: 249 RFMAEMVDFFILFFIKATIVLSIMHLSGIKDISKFAMHYIIEEIDE-DTSMEDLQKMMVV 307
Query: 582 EIVYRLLVCLFEAICLCGNVGQIGGATPGKALLGLRVVTASAILPVEGRPKETVVLYPGR 403
++YRLLVC +E IC+ G GGATPGK LLGLRVVT + + P +V+ P
Sbjct: 308 ALIYRLLVCFYEIICIWG----AGGATPGKFLLGLRVVTCDTSVLIA--PSRVLVI-PSS 360
Query: 402 PLGFPLALLRSLLKNFLISLLFPLCVVMFVFKHNRTGYDIVCGVIVVEEN 253
+ + +R+L+KNF I+ FP + + F+HNRT YDIV G IVV+ N
Sbjct: 361 NVSITTSTIRALIKNFSIASFFPAFITLLFFQHNRTAYDIVAGTIVVKRN 410
>AL138824-5|CAI12251.1| 413|Homo sapiens family with sequence
similarity 8, member A1 protein.
Length = 413
Score = 103 bits (248), Expect = 6e-22
Identities = 61/170 (35%), Positives = 88/170 (51%)
Frame = -3
Query: 762 RLXAEXIDXXXXXXXXXXXXXVAVDTLXIIDTEKFDFQKFSEYYDDYKSAIEFTSGILFL 583
R AE +D + I D KF E D+ +++E ++ +
Sbjct: 249 RFMAEMVDFFILFFIKATIVLSIMHLSGIKDISKFAMHYIIEEIDE-DTSMEDLQKMMVV 307
Query: 582 EIVYRLLVCLFEAICLCGNVGQIGGATPGKALLGLRVVTASAILPVEGRPKETVVLYPGR 403
++YRLLVC +E IC+ G GGATPGK LLGLRVVT + + P +V+ P
Sbjct: 308 ALIYRLLVCFYEIICIWG----AGGATPGKFLLGLRVVTCDTSVLIA--PSRVLVI-PSS 360
Query: 402 PLGFPLALLRSLLKNFLISLLFPLCVVMFVFKHNRTGYDIVCGVIVVEEN 253
+ + +R+L+KNF I+ FP + + F+HNRT YDIV G IVV+ N
Sbjct: 361 NVSITTSTIRALIKNFSIASFFPAFITLLFFQHNRTAYDIVAGTIVVKRN 410
>AF097027-1|AAF07850.1| 413|Homo sapiens autosomal highly conserved
protein protein.
Length = 413
Score = 103 bits (248), Expect = 6e-22
Identities = 61/170 (35%), Positives = 88/170 (51%)
Frame = -3
Query: 762 RLXAEXIDXXXXXXXXXXXXXVAVDTLXIIDTEKFDFQKFSEYYDDYKSAIEFTSGILFL 583
R AE +D + I D KF E D+ +++E ++ +
Sbjct: 249 RFMAEMVDFFILFFIKATIVLSIMHLSGIKDISKFAMHYIIEEIDE-DTSMEDLQKMMVV 307
Query: 582 EIVYRLLVCLFEAICLCGNVGQIGGATPGKALLGLRVVTASAILPVEGRPKETVVLYPGR 403
++YRLLVC +E IC+ G GGATPGK LLGLRVVT + + P +V+ P
Sbjct: 308 ALIYRLLVCFYEIICIWG----AGGATPGKFLLGLRVVTCDTSVLIA--PSRVLVI-PSS 360
Query: 402 PLGFPLALLRSLLKNFLISLLFPLCVVMFVFKHNRTGYDIVCGVIVVEEN 253
+ + +R+L+KNF I+ FP + + F+HNRT YDIV G IVV+ N
Sbjct: 361 NVSITTSTIRALIKNFSIASFFPAFITLLFFQHNRTAYDIVAGTIVVKRN 410
>AF097026-1|AAF07849.1| 413|Homo sapiens autosomal highly conserved
protein protein.
Length = 413
Score = 103 bits (248), Expect = 6e-22
Identities = 61/170 (35%), Positives = 88/170 (51%)
Frame = -3
Query: 762 RLXAEXIDXXXXXXXXXXXXXVAVDTLXIIDTEKFDFQKFSEYYDDYKSAIEFTSGILFL 583
R AE +D + I D KF E D+ +++E ++ +
Sbjct: 249 RFMAEMVDFFILFFIKATIVLSIMHLSGIKDISKFAMHYIIEEIDE-DTSMEDLQKMMVV 307
Query: 582 EIVYRLLVCLFEAICLCGNVGQIGGATPGKALLGLRVVTASAILPVEGRPKETVVLYPGR 403
++YRLLVC +E IC+ G GGATPGK LLGLRVVT + + P +V+ P
Sbjct: 308 ALIYRLLVCFYEIICIWG----AGGATPGKFLLGLRVVTCDTSVLIA--PSRVLVI-PSS 360
Query: 402 PLGFPLALLRSLLKNFLISLLFPLCVVMFVFKHNRTGYDIVCGVIVVEEN 253
+ + +R+L+KNF I+ FP + + F+HNRT YDIV G IVV+ N
Sbjct: 361 NVSITTSTIRALIKNFSIASFFPAFITLLFFQHNRTAYDIVAGTIVVKRN 410
>BC146759-1|AAI46760.1| 1523|Homo sapiens slit homolog 3 (Drosophila)
protein.
Length = 1523
Score = 30.3 bits (65), Expect = 8.5
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 457 HITRRGTSERDSSALPGQTLGVSPGITKITV 365
H R +D ALP Q+LGVSPG TV
Sbjct: 1307 HEVRINNELQDFKALPPQSLGVSPGCKSCTV 1337
>AY358884-1|AAQ89243.1| 1523|Homo sapiens SLIT3 protein.
Length = 1523
Score = 30.3 bits (65), Expect = 8.5
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 457 HITRRGTSERDSSALPGQTLGVSPGITKITV 365
H R +D ALP Q+LGVSPG TV
Sbjct: 1307 HEVRINNELQDFKALPPQSLGVSPGCKSCTV 1337
>AF075240-1|AAD19336.1| 850|Homo sapiens SLIT1 protein protein.
Length = 850
Score = 30.3 bits (65), Expect = 8.5
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 457 HITRRGTSERDSSALPGQTLGVSPGITKITV 365
H R +D ALP Q+LGVSPG TV
Sbjct: 634 HEVRINNELQDFKALPPQSLGVSPGCKSCTV 664
>AB017169-1|BAA35186.1| 1523|Homo sapiens Slit-3 protein protein.
Length = 1523
Score = 30.3 bits (65), Expect = 8.5
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 457 HITRRGTSERDSSALPGQTLGVSPGITKITV 365
H R +D ALP Q+LGVSPG TV
Sbjct: 1307 HEVRINNELQDFKALPPQSLGVSPGCKSCTV 1337
>AB011538-1|BAA32466.2| 1559|Homo sapiens MEGF5 protein.
Length = 1559
Score = 30.3 bits (65), Expect = 8.5
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 457 HITRRGTSERDSSALPGQTLGVSPGITKITV 365
H R +D ALP Q+LGVSPG TV
Sbjct: 1343 HEVRINNELQDFKALPPQSLGVSPGCKSCTV 1373
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,976,896
Number of Sequences: 237096
Number of extensions: 2151609
Number of successful extensions: 11681
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11670
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -