Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1457
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40955-5|AAA81753.1|  263|Caenorhabditis elegans Hypothetical pr...    67   1e-11
Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z68753-1|CAA92989.1|  499|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical p...    29   5.1  
D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper transpor...    29   5.1  
AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase...    29   5.1  
Z74037-2|CAD36492.1|  441|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z74037-1|CAA98492.1|  510|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U40955-5|AAA81753.1|  263|Caenorhabditis elegans Hypothetical
           protein F48B9.8 protein.
          Length = 263

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
 Frame = -3

Query: 627 DYKSAIEFTSGILFLEIVYRLLVCLFEAICLCGNVGQIG-GATPGKALLGLRVVTASAIL 451
           D  + I     +L +E+V ++  C  EA+ +    G IG G T GK + G+RV++   + 
Sbjct: 139 DVMNFINLAQDLLPVEVVCKVFCCFVEAVLMARGFGPIGVGQTLGKWMCGIRVISCRDVT 198

Query: 450 PVEGRPKETVVLYPGRPLGFPLALLRSLLKNFLISLLFPLCVVMFVFKHNRTGYDIVCGV 271
             E RP + +V  P   + +  AL RS +KN ++S  FPL   +F     R  YD++   
Sbjct: 199 SAE-RPDQIIVEGPDL-ITYSQALKRSFIKNLVVSSFFPLSTAVFQINRGRVFYDMMVKT 256

Query: 270 IVVEE 256
            VV E
Sbjct: 257 CVVVE 261


>Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical
           protein ZC518.1b protein.
          Length = 480

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
 Frame = -3

Query: 594 ILFLEIVYRLLVCLFEAICLCGNVGQIGGATPGKALLGLRVVTASAILPVEGRPKETVVL 415
           +++ ++++ L V ++  ICL G    + G  P    L L + T    L   G  K    L
Sbjct: 235 LVYPQVIF-LAVRIYFMICLIGRQFIVTGPNPSGIDLWLPITTMVQFLVYMGWMKVAEAL 293

Query: 414 YPGRPLGFPLALLRSLLKNFLI--SLLFPLCVVMFVFKHNRTGYDIV 280
               PLG     L     N++I  +L+  L +V  ++KH+ TGY +V
Sbjct: 294 L--NPLGEDDDDLEC---NYIIDKNLITGLSIVDTMWKHDDTGYSMV 335


>Z68753-1|CAA92989.1|  499|Caenorhabditis elegans Hypothetical
           protein ZC518.1a protein.
          Length = 499

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
 Frame = -3

Query: 594 ILFLEIVYRLLVCLFEAICLCGNVGQIGGATPGKALLGLRVVTASAILPVEGRPKETVVL 415
           +++ ++++ L V ++  ICL G    + G  P    L L + T    L   G  K    L
Sbjct: 235 LVYPQVIF-LAVRIYFMICLIGRQFIVTGPNPSGIDLWLPITTMVQFLVYMGWMKVAEAL 293

Query: 414 YPGRPLGFPLALLRSLLKNFLI--SLLFPLCVVMFVFKHNRTGYDIV 280
               PLG     L     N++I  +L+  L +V  ++KH+ TGY +V
Sbjct: 294 L--NPLGEDDDDLEC---NYIIDKNLITGLSIVDTMWKHDDTGYSMV 335


>Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical
           protein Y76A2A.2 protein.
          Length = 1238

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = -3

Query: 633 YDDYKSA--IEFTSGILF---LEIVYRLLVCLFEAICLCGNVGQIGGATPGKALLGLRVV 469
           Y +Y SA       G+ F   L+I +   + +    C C     +G ATP   ++G  V 
Sbjct: 706 YIEYNSARNANLPPGLRFEEALKIAFEAAITVLAIACPCS----LGLATPTAVMVGTGVG 761

Query: 468 TASAILPVEGRPKETV 421
            A+ IL   G P E+V
Sbjct: 762 AANGILIKGGEPLESV 777


>D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper
           transporting ATPase protein.
          Length = 1238

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = -3

Query: 633 YDDYKSA--IEFTSGILF---LEIVYRLLVCLFEAICLCGNVGQIGGATPGKALLGLRVV 469
           Y +Y SA       G+ F   L+I +   + +    C C     +G ATP   ++G  V 
Sbjct: 706 YIEYNSARNANLPPGLRFEEALKIAFEAAITVLAIACPCS----LGLATPTAVMVGTGVG 761

Query: 468 TASAILPVEGRPKETV 421
            A+ IL   G P E+V
Sbjct: 762 AANGILIKGGEPLESV 777


>AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical
           protein Y76A2A.2 protein.
          Length = 1238

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = -3

Query: 633 YDDYKSA--IEFTSGILF---LEIVYRLLVCLFEAICLCGNVGQIGGATPGKALLGLRVV 469
           Y +Y SA       G+ F   L+I +   + +    C C     +G ATP   ++G  V 
Sbjct: 706 YIEYNSARNANLPPGLRFEEALKIAFEAAITVLAIACPCS----LGLATPTAVMVGTGVG 761

Query: 468 TASAILPVEGRPKETV 421
            A+ IL   G P E+V
Sbjct: 762 AANGILIKGGEPLESV 777


>AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase
           protein.
          Length = 1116

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = -3

Query: 633 YDDYKSA--IEFTSGILF---LEIVYRLLVCLFEAICLCGNVGQIGGATPGKALLGLRVV 469
           Y +Y SA       G+ F   L+I +   + +    C C     +G ATP   ++G  V 
Sbjct: 584 YIEYNSARNANLPPGLRFEEALKIAFEAAITVLAIACPCS----LGLATPTAVMVGTGVG 639

Query: 468 TASAILPVEGRPKETV 421
            A+ IL   G P E+V
Sbjct: 640 AANGILIKGGEPLESV 655


>Z74037-2|CAD36492.1|  441|Caenorhabditis elegans Hypothetical
           protein F57B7.1b protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 567 TYIRFPETIFLK*ILLQIYN-HHNIH*ISGNQIFLCQLSXV 686
           T+I  P+  FL  + + +YN +H IH  +   IFLC L  +
Sbjct: 9   TFIHLPDKSFLYDVFVSVYNFYHPIH--AYLSIFLCVLGTI 47


>Z74037-1|CAA98492.1|  510|Caenorhabditis elegans Hypothetical
           protein F57B7.1a protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 567 TYIRFPETIFLK*ILLQIYN-HHNIH*ISGNQIFLCQLSXV 686
           T+I  P+  FL  + + +YN +H IH  +   IFLC L  +
Sbjct: 9   TFIHLPDKSFLYDVFVSVYNFYHPIH--AYLSIFLCVLGTI 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,041,076
Number of Sequences: 27780
Number of extensions: 340722
Number of successful extensions: 817
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)