Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1456
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    27   3.1  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.4  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   7.2  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   7.2  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   9.5  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   9.5  

>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 318 DRDIRRSLRRCYQKLVASSVNF*IVI 241
           D ++ +++RRCYQ L  +S +F +VI
Sbjct: 28  DENVPQNIRRCYQLLDMTSRSFAVVI 53


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -2

Query: 286 LSKARSFLCKLLNCNLRFPGLGVF---RLFPGGFCCQNLLMK 170
           +S AR+F   L NC  RF    +F   R F  G   + L +K
Sbjct: 6   ISTARNFKYPLFNCERRFSYFDMFRSKRKFTSGILTEQLALK 47


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 548 AYNYWHLVPNSARGT 504
           AY+YWH  PN   GT
Sbjct: 325 AYSYWHESPNMGLGT 339


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 548 AYNYWHLVPNSARGT 504
           AY+YWH  PN   GT
Sbjct: 325 AYSYWHESPNMGLGT 339


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 609 NGSIYQFWFLXSYSVTWITXVILELIHAIRNSD 707
           NG + +F+FL S ++ W+   +LE+      SD
Sbjct: 22  NGKMKEFFFLVSETMDWLNEHMLEVSKLQLESD 54


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 789 IHQNXRLRTRGPPSIGFDXIKALIPI 712
           IH +  L  +  PS GF  I++L+PI
Sbjct: 402 IHASSTLVLKKDPSFGFSVIESLMPI 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,260
Number of Sequences: 5004
Number of extensions: 48600
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)