Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1456
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0328 - 16805296-16806121,16806493-16807274                       29   3.3  
08_02_0440 + 17192122-17192691,17193947-17194912                       29   5.7  
02_05_0390 + 28557722-28557937,28558440-28558514,28558597-285587...    28   9.9  
01_07_0229 + 42161770-42164562                                         28   9.9  

>10_08_0328 - 16805296-16806121,16806493-16807274
          Length = 535

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 157 TYSNFSLGDFGNKTPRGIV*ILPNLEILDYNLEVYRGSYELLIXXXXXXXNVPIELDK 330
           TY + SL +F    P  +   LPNL  L+ ++  + G     +       N+P EL K
Sbjct: 217 TYLDLSLNNFSGSIPDLLPEKLPNLTHLNLSINAFSGRIPDSLRSNMFTGNIPPELGK 274


>08_02_0440 + 17192122-17192691,17193947-17194912
          Length = 511

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 399 ETNHRSQEIDYNINFRSEKKEFCLANFRSVTTGNICTSCRIRHEVPVVICLS 554
           E N  S  +  ++  R+ K E CL  FRS+    IC +  +     V+ CL+
Sbjct: 284 EPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPT--VATYTSVIKCLA 333


>02_05_0390 +
           28557722-28557937,28558440-28558514,28558597-28558766,
           28559046-28559124,28559320-28559516,28560300-28560387,
           28560453-28560679,28560763-28560919,28561467-28561517
          Length = 419

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 495 GNICTSCRIRHEVPVVI-CLSQRLS 566
           G +C +CR++H  PVV+ CL  R +
Sbjct: 132 GEVCYACRLQHLPPVVLTCLLPRFT 156


>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 160 YSNFSLGDFGNKTPRGIV*ILPNLEILDYNLEVYRGSYE 276
           Y N S  DF  K P G++  L  L++LD     Y G  E
Sbjct: 579 YLNLSYMDFLEKIPYGVIPNLSKLQVLDLYGSRYAGCEE 617


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,417,248
Number of Sequences: 37544
Number of extensions: 284453
Number of successful extensions: 501
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)