Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1455
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   4.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.4  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   8.4  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 73  INDQTGEKLYLHLMHYAIEKYILCVP 150
           + D+  E+ Y+H  HY I+K +  VP
Sbjct: 607 VADKLMEEKYVHYSHYLIKKIMKYVP 632


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 328  ETSPHYGTSSYLVILKPNLQHVHRNTLQ 411
            ETSP   T SY + L   LQH  R++L+
Sbjct: 1386 ETSPSEHTQSYNLNLLDVLQHTLRDSLK 1413


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 343 YGTSSYLVILKPNLQHVHRNTLQLQEPGNEM 435
           YGT+ Y      N Q  + + + L EPG+E+
Sbjct: 199 YGTTKYCTSYLRNQQCPNPSCMYLHEPGDEV 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,438
Number of Sequences: 5004
Number of extensions: 35954
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)