Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1454
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    43   4e-05

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 27/77 (35%), Positives = 33/77 (42%)
 Frame = -1

Query: 437 NPYLLGDPXNXTPANPLVTPVXIQPE*YFLFXYXIFXSXPNXLGGVXXXXXXXXXXXXLP 258
           NPY   +P    PA+PL TP+ I PE Y L  Y I  + PN   GV            LP
Sbjct: 247 NPYGFMEPDCALPADPLKTPMSIVPEWYLLPFYAILRAIPNFQLGVIAMLLSILVLLLLP 306

Query: 257 FTFKKKIQGIQFYPINQ 207
                 I+G  F P  +
Sbjct: 307 LLDFSAIRGNSFNPFGK 323



 Score = 30.7 bits (66), Expect = 0.19
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -3

Query: 558 NNPLGLNRNLDKIPFHPFFXL 496
           +NPLG+  N+D+IP +P++ +
Sbjct: 207 SNPLGVTANMDRIPMNPYYLI 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,226,046
Number of Sequences: 5004
Number of extensions: 12179
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)