Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1453
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   112   2e-26
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   109   2e-25
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.48 
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   5.9  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  112 bits (270), Expect = 2e-26
 Identities = 51/81 (62%), Positives = 63/81 (77%)
 Frame = -1

Query: 346 LKLXXAQNCARCVPKDKAIKKFVIRNIVQAAAVRDIXXASVYPMFQLPKLYAKLXYCVSC 167
           +K     NC+R VPKDKAIK++ IRN+V+ AA+RD+  ASVY  + +PKLY KL YCVSC
Sbjct: 18  VKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSC 77

Query: 166 AIHSKVVRNRSXKDRRIRTPP 104
           AIHS+VVR RS + RRIRTPP
Sbjct: 78  AIHSRVVRVRSREGRRIRTPP 98


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  109 bits (262), Expect = 2e-25
 Identities = 48/74 (64%), Positives = 61/74 (82%)
 Frame = -1

Query: 325 NCARCVPKDKAIKKFVIRNIVQAAAVRDIXXASVYPMFQLPKLYAKLXYCVSCAIHSKVV 146
           NC+R VPKDKAIK++ IRN+V+ AA+RD+  ASVY  + +PK+Y KL YCVSCAIH++VV
Sbjct: 25  NCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAIHARVV 84

Query: 145 RNRSXKDRRIRTPP 104
           R RS + RRIRTPP
Sbjct: 85  RVRSREGRRIRTPP 98


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -1

Query: 316 RCVPKDKAIKKFVIRNIVQAAAVRDI 239
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 178 CVSCAIHSKVVRNRSXKDRRIRTPPKS 98
           C SC+   K   N+  + RR++  PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,467,627
Number of Sequences: 5004
Number of extensions: 22617
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)