Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1453
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   105   2e-23
07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049     29   2.6  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  105 bits (251), Expect = 2e-23
 Identities = 46/82 (56%), Positives = 62/82 (75%)
 Frame = -1

Query: 346 LKLXXAQNCARCVPKDKAIKKFVIRNIVQAAAVRDIXXASVYPMFQLPKLYAKLXYCVSC 167
           +K     NCA+C PKDKAIK+F +RNIV+ AA+RD+  A V+  + LPKLYAK+ +CVSC
Sbjct: 18  VKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSC 77

Query: 166 AIHSKVVRNRSXKDRRIRTPPK 101
           AIH+ +VR RS ++RR R PP+
Sbjct: 78  AIHAHIVRVRSRENRRDRRPPE 99


>07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049
          Length = 444

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 352 PRPCLARLXPNSCSPGDPLVLXRPXP 429
           PR    RL P SC+PG P  L  P P
Sbjct: 32  PRLQGRRLTPPSCTPGTPAALPSPGP 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,105,285
Number of Sequences: 37544
Number of extensions: 200795
Number of successful extensions: 378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)