Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1453
         (481 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal prot...   132   2e-31
X13625-1|CAB38441.1|  114|Drosophila melanogaster protein ( Dros...   132   2e-31
AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p pro...   132   2e-31
AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-P...   132   2e-31
AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-P...   132   2e-31
AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-P...   132   2e-31
X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like p...    40   0.002

>X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal protein
           S31 protein.
          Length = 114

 Score =  132 bits (319), Expect = 2e-31
 Identities = 62/79 (78%), Positives = 68/79 (86%)
 Frame = -1

Query: 325 NCARCVPKDKAIKKFVIRNIVQAAAVRDIXXASVYPMFQLPKLYAKLXYCVSCAIHSKVV 146
           NCARCVPKDKAIKKFVIRNIV+AAAVRDI  AS++  + LPKLYAKL YCVSCAIHSKVV
Sbjct: 25  NCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVV 84

Query: 145 RNRSXKDRRIRTPPKSNXP 89
           RNRS + RRIRTPP  + P
Sbjct: 85  RNRSREARRIRTPPLRSFP 103


>X13625-1|CAB38441.1|  114|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for putative ribosomal
           protein S31. ).
          Length = 114

 Score =  132 bits (319), Expect = 2e-31
 Identities = 62/79 (78%), Positives = 68/79 (86%)
 Frame = -1

Query: 325 NCARCVPKDKAIKKFVIRNIVQAAAVRDIXXASVYPMFQLPKLYAKLXYCVSCAIHSKVV 146
           NCARCVPKDKAIKKFVIRNIV+AAAVRDI  AS++  + LPKLYAKL YCVSCAIHSKVV
Sbjct: 25  NCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVV 84

Query: 145 RNRSXKDRRIRTPPKSNXP 89
           RNRS + RRIRTPP  + P
Sbjct: 85  RNRSREARRIRTPPLRSFP 103


>AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p
           protein.
          Length = 114

 Score =  132 bits (319), Expect = 2e-31
 Identities = 62/79 (78%), Positives = 68/79 (86%)
 Frame = -1

Query: 325 NCARCVPKDKAIKKFVIRNIVQAAAVRDIXXASVYPMFQLPKLYAKLXYCVSCAIHSKVV 146
           NCARCVPKDKAIKKFVIRNIV+AAAVRDI  AS++  + LPKLYAKL YCVSCAIHSKVV
Sbjct: 25  NCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVV 84

Query: 145 RNRSXKDRRIRTPPKSNXP 89
           RNRS + RRIRTPP  + P
Sbjct: 85  RNRSREARRIRTPPLRSFP 103


>AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-PC,
           isoform C protein.
          Length = 114

 Score =  132 bits (319), Expect = 2e-31
 Identities = 62/79 (78%), Positives = 68/79 (86%)
 Frame = -1

Query: 325 NCARCVPKDKAIKKFVIRNIVQAAAVRDIXXASVYPMFQLPKLYAKLXYCVSCAIHSKVV 146
           NCARCVPKDKAIKKFVIRNIV+AAAVRDI  AS++  + LPKLYAKL YCVSCAIHSKVV
Sbjct: 25  NCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVV 84

Query: 145 RNRSXKDRRIRTPPKSNXP 89
           RNRS + RRIRTPP  + P
Sbjct: 85  RNRSREARRIRTPPLRSFP 103


>AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-PB,
           isoform B protein.
          Length = 114

 Score =  132 bits (319), Expect = 2e-31
 Identities = 62/79 (78%), Positives = 68/79 (86%)
 Frame = -1

Query: 325 NCARCVPKDKAIKKFVIRNIVQAAAVRDIXXASVYPMFQLPKLYAKLXYCVSCAIHSKVV 146
           NCARCVPKDKAIKKFVIRNIV+AAAVRDI  AS++  + LPKLYAKL YCVSCAIHSKVV
Sbjct: 25  NCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVV 84

Query: 145 RNRSXKDRRIRTPPKSNXP 89
           RNRS + RRIRTPP  + P
Sbjct: 85  RNRSREARRIRTPPLRSFP 103


>AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-PA,
           isoform A protein.
          Length = 114

 Score =  132 bits (319), Expect = 2e-31
 Identities = 62/79 (78%), Positives = 68/79 (86%)
 Frame = -1

Query: 325 NCARCVPKDKAIKKFVIRNIVQAAAVRDIXXASVYPMFQLPKLYAKLXYCVSCAIHSKVV 146
           NCARCVPKDKAIKKFVIRNIV+AAAVRDI  AS++  + LPKLYAKL YCVSCAIHSKVV
Sbjct: 25  NCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVV 84

Query: 145 RNRSXKDRRIRTPPKSNXP 89
           RNRS + RRIRTPP  + P
Sbjct: 85  RNRSREARRIRTPPLRSFP 103


>X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like
           protein protein.
          Length = 110

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/23 (73%), Positives = 17/23 (73%)
 Frame = -1

Query: 442 WXSXAVXAXXELVDPPGCRNXAR 374
           W S AV A  ELVDPPGCRN AR
Sbjct: 1   WSSTAVAAALELVDPPGCRNSAR 23


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,569,118
Number of Sequences: 53049
Number of extensions: 314015
Number of successful extensions: 490
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)