Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1452
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 220 1e-57
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 198 5e-51
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 192 3e-49
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 144 8e-35
01_06_1243 - 35681569-35681712,35681799-35681904,35682054-356821... 30 2.0
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404... 29 3.5
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568... 29 3.5
08_01_0010 + 80052-81419 28 8.2
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 220 bits (537), Expect = 1e-57
Identities = 102/140 (72%), Positives = 117/140 (83%)
Frame = -2
Query: 501 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 322
MGRMH+ GKGIS SA+PY+R+ P+W+K A DV+E I K KKG PSQIGV+LRD HG+
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 321 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 142
V+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61 PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 141 RIHRLARYYKTKSVLPPNWK 82
RIHRLARYYK LPP WK
Sbjct: 121 RIHRLARYYKRTKKLPPTWK 140
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 198 bits (482), Expect = 5e-51
Identities = 90/140 (64%), Positives = 113/140 (80%)
Frame = -2
Query: 501 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 322
MGRMH+ GKG+S S LPYRR+ P W+K +A +V+E I ++ KKG PSQIG +LRD+H V
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAV 60
Query: 321 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 142
+ VTG KILR++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILVES
Sbjct: 61 PLAQGVTGGKILRVLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVES 120
Query: 141 RIHRLARYYKTKSVLPPNWK 82
R+HRL RYY+ +P +K
Sbjct: 121 RVHRLTRYYRLAKKIPAFFK 140
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 192 bits (467), Expect = 3e-49
Identities = 98/149 (65%), Positives = 110/149 (73%), Gaps = 17/149 (11%)
Frame = -2
Query: 477 KGISQSALPYRRSVPTWLKLTADDV-----------------KEQIYKLGKKGLTPSQIG 349
KGIS SALPY+R+ P+WLK A DV +E I K KKG PSQIG
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90
Query: 348 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDS 169
V+LRD HG+ V+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDS
Sbjct: 91 VVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDS 150
Query: 168 KFRLILVESRIHRLARYYKTKSVLPPNWK 82
KFRLILVESRIHRLARYYK LPP WK
Sbjct: 151 KFRLILVESRIHRLARYYKRTKKLPPTWK 179
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 144 bits (348), Expect = 8e-35
Identities = 70/106 (66%), Positives = 80/106 (75%)
Frame = -2
Query: 408 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYL 229
+V+E I K K G SQIGV+LR HG+ V+ + KIL I+KA GLAP + EDLY+L
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAPKILEDLYFL 148
Query: 228 IKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPP 91
IKKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK LPP
Sbjct: 149 IKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPP 194
>01_06_1243 -
35681569-35681712,35681799-35681904,35682054-35682149,
35682234-35682361,35683000-35683260,35683343-35683428,
35683524-35683616,35683720-35683815,35683946-35684300
Length = 454
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 465 GRYPYQERAYDPCLRLFT 518
GRYP+ RAYDPC ++
Sbjct: 295 GRYPWLSRAYDPCTERYS 312
>07_03_1281 -
25439634-25439750,25439868-25440071,25440328-25440402,
25440477-25440631,25440704-25440824,25440946-25441020,
25441216-25441353,25441617-25441727,25441883-25441987,
25442061-25442139,25442488-25442549,25442634-25442699,
25442812-25442907,25443353-25443403,25443629-25443709
Length = 511
Score = 29.1 bits (62), Expect = 3.5
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = -2
Query: 462 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG-KKIL 286
S +PY T L D++K+Q+ + KG+T + V++ + QV KKI+
Sbjct: 216 SLVPYFLDEETGWGLEVDELKKQLEEAQSKGITVRAL-VVINPGNPTGQVLAEENQKKIV 274
Query: 285 RIMKAMG---LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 142
K G LA ++ ++ Y+ K K + R+ D L+ +S
Sbjct: 275 EFCKNEGLVLLADEVYQENIYVEDKKFHSFKKIARSMGYTDDDLPLVSFQS 325
>04_04_1209 +
31755637-31755821,31756017-31756165,31756703-31756845,
31756902-31757024
Length = 199
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Frame = -2
Query: 294 KILRIMKAMGL-APD--LPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE----SRI 136
KI R+++A+ A D LP +L ++ AV MR R+RK+KD++ ++++E R
Sbjct: 105 KITRVLRAVHTGAHDRRLPGNLDKTVRVAV-MRPKTSRSRKEKDAEEEVLVIEGIERERE 163
Query: 135 HRLARY 118
HR Y
Sbjct: 164 HRGGEY 169
>08_01_0010 + 80052-81419
Length = 455
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 400 LYIVGSQFQPGRDTAAVRQRRLGDTLTRSVH 492
+++VG F R AAVR+ R G + R VH
Sbjct: 236 VFVVGVAFAVARHPAAVRELRAGPSRMRVVH 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,925,539
Number of Sequences: 37544
Number of extensions: 370717
Number of successful extensions: 854
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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